DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ck and XIH

DIOPT Version :9

Sequence 1:NP_001285949.1 Gene:ck / 34882 FlyBaseID:FBgn0000317 Length:2167 Species:Drosophila melanogaster
Sequence 2:NP_194600.2 Gene:XIH / 828991 AraportID:AT4G28710 Length:1516 Species:Arabidopsis thaliana


Alignment Length:1721 Identity:474/1721 - (27%)
Similarity:752/1721 - (43%) Gaps:415/1721 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 VTRGDYIWIEPASGREFDVA-IGARVVSAEGRRIQVRDDDGDEVWLAPERRIKAMHASSVQ---- 63
            |..|..:|:|     :.:|| |...|:..:|..|:|:...|..|.:    ::.:.:...|:    
plant     6 VNVGSCVWVE-----DPEVAWIDGEVIEVKGSDIKVKCTSGKTVAI----KVSSAYPKDVEAPAS 61

  Fly    64 GVEDMISLGDLHEAGILRNLLIRYKENLIYTYTGSILVAVNPYQILP-IYTGDQIKLYKERKIGE 127
            ||:||..|..|||.|:|:|:..|:..|.||||||:||:||||::.|| :|....::.||....||
plant    62 GVDDMTRLAYLHEPGVLQNMKSRFDINEIYTYTGNILIAVNPFRRLPHLYNNHMMQQYKGAGFGE 126

  Fly   128 LPPHIFAIGDNAYAHMKRYRQDQCIVISGESGAGKTESTKLILQYLAAISGK----HSWIEQQIL 188
            |.||.||:.|.||..||.....|.|::||||||||||:|||::||||.:.|:    ...:|:::|
plant   127 LSPHPFAVADAAYRQMKNQGISQSILVSGESGAGKTETTKLLMQYLADMGGRAVSEGRTVEKKVL 191

  Fly   189 EANPILEAFGNAKTIRNDNSSRFGKYIDIHFSANGVIEGAKIEQYLLEKSRIVSQNHSERNYHVF 253
            |:||:|||||||||:||:|||||||:::|.|...|.|.||.|..||||:||:...:..|||||.|
plant   192 ESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDQRGRISGAAIRTYLLERSRVCQVSDPERNYHCF 256

  Fly   254 YCILAGLSADEKSRLDLGMAADYKYLTGGNSITCEGRDDAAEFSDIRSAMKVLLFSDQEIWEIIK 318
            |.:.|....|.| :..|.....:.||.....|..|..|||.|:.:.|.||.|:..:.:|...|.:
plant   257 YMLCAAPPEDIK-KWKLADPRKFHYLNQSQCIELERMDDAKEYRETRKAMDVVGINSEEQEAIFQ 320

  Fly   319 LLAALLHCGNIKY-KATVVDNLDATEIPEHINVERVAGLLGLPIQPLIDALTRRTLFAHGETVVS 382
            ::||:||.||::: |....|:....:...:.:::..|.|.....|.|.|:|.:|.:...|||:..
plant   321 VVAAILHLGNVEFGKGKEADSSAPKDDTSNYHLKTAAELFMCDEQALEDSLCKRVIVTRGETITK 385

  Fly   383 TLSRDQSVDVRDAFVKGIYGRMFVHIVRKINTAIFKPRGTSRNAIGVLDIFGFENFDQNSFEQFC 447
            .|.::.:...|||..|.:|.|:|..||.|||.:|.:. ..|...||||||:|||:|..|||||||
plant   386 CLDQESAALSRDALAKTVYSRLFDWIVNKINDSIGQD-PDSEYLIGVLDIYGFESFKTNSFEQFC 449

  Fly   448 INYANENLQQFFVQHIFKLEQEEYNHEAINWQHIEFVDNQDALDLIAIKQLNIMALIDEEARFPK 512
            ||..||.|||.|.||:||:||:|||.|.|:|.:|||||||:.||||..|...|::|::|...||:
plant   450 INLTNEKLQQHFNQHVFKMEQDEYNKEEIDWSYIEFVDNQEILDLIEKKAGGIISLLNEACMFPR 514

  Fly   513 GTDQTMLAKLHKTHGSHKNYLKPKSDINTSFGLNHFAGVVFYDTRGFLDKNRDTFSPDLLHLVSQ 577
            .|.:|...|:::|...||::.|||.. .|.|.:.|:||.|.|.|..||:||:|....:...|::.
plant   515 ATHETFAEKMYQTFKDHKHFSKPKLS-RTDFTICHYAGDVTYQTEQFLEKNKDYVVAEHQTLLNA 578

  Fly   578 STNKFLRQIF---AQDIEMGAETRKRTPTLSTQFRKSLDALMKTLSSCQPFFIRCIKPNELKKPM 639
            |...|:..:|   |:|    |..:.:..::|::|::.|..|::|||:.:|.:|||:|||.|.||:
plant   579 SRCAFVASLFPLLAED----ANKKSKFSSISSRFKQQLVTLLETLSTTEPHYIRCVKPNNLLKPL 639

  Fly   640 MFDRGLCCRQLRYSGMMETIRIRRAGYPIRHGFREFVERYRFLIPGVP-------PAHRTDCQAA 697
            :|:.....:|||..|:||.|||..||:|.|..|.||:||:..|.|.|.       |...||..|.
plant   640 IFENQNVLQQLRCGGVMEAIRISCAGFPTRKKFEEFLERFSVLAPEVLDKSTDGWPLSSTDDVAC 704

  Fly   698 TSRICAVVLGKSDYQLGHTKVFLKDAHDLFLEQERDRVLTRKILILQRSIRGWVYRRRFLRLRAA 762
            ...:..|.|  ..||:|.|||||:......|:..|:.||.|....:||..|.::.|:.||.||..
plant   705 KKLLEKVAL--QGYQIGKTKVFLRAGQMADLDARRNEVLGRAASRIQRKFRSYLSRKTFLMLRKV 767

  Fly   763 AITVQRFWKGYAQRKRYRNMR--VGYMRLQALIRSRVLSHRFRHLRGHIVGLQAHARGYLV--RR 823
            |..:|...:|...|..:..:|  ...:.:|..||..:....::.|....|.:|...||...  |.
plant   768 ATNMQAVCRGQLSRLIFEGLRRDAAVLEIQRDIRMHLARKSYKELYFAAVSIQLGIRGMASRGRL 832

  Fly   824 EYGHKMWAVIKIQSHVRRMIAMRRYRKL-------------RLEHKQFAEVLQLRKL----EEQE 871
            .:..:..|.|.||||.|:.:|...|::|             ||..|      :||||    :|..
plant   833 RFQRQDKAAIMIQSHCRKFLAQLHYQRLKKAAITTQSAWRARLARK------ELRKLKMAAKETG 891

  Fly   872 LLHRG-NKHAREIAEQHYRDRLHELERREIQE----------------QLENRRRVEVNMNIIND 919
            :|... :|..:::.|..::.:|.:..|.:::|                ||:.:....:::..: :
plant   892 VLEAAKSKLEKQVEELTWKLQLEKRMRTDMEESKTQENAKLRSALEEMQLQFKETKALHLQEV-E 955

  Fly   920 AARK--------QEEPVDDGKLVEAMFDFLPDSSSDAPTPHGGRETSVFNDLPHAQNVNQDDIIA 976
            ||:|        ||.||.|.:|||.:                   ||        :|.....:::
plant   956 AAKKMAETVPVLQEVPVVDTELVEKL-------------------TS--------ENEKLKSLVS 993

  Fly   977 PIHISEDEEDLSEFKFQKFAATYFQGNVNHQYAKKAL--KHPLLPLHTQGDQLAAQALWI----- 1034
            .:....||   :|.||::      :..:|.:..|:|:  :..::.|.|...:|..:.|.:     
plant   994 SLDQKIDE---TEKKFEE------RSKINEERLKQAIEAETTIVNLKTAVHELQEKILDVESENK 1049

  Fly  1035 -----TILRFTGDMPEP--------------------------------------KYHTMDRM-- 1054
                 ::::.:|.:|..                                      :|| :||.  
plant  1050 ILRQKSLIQASGHLPPTPVKGSQNGHFSSKESPFNGSEIETLARTQEQESDAKTRRYH-LDRQRE 1113

  Fly  1055 DTTSVMSKVTATLGRN-------------FIRSKEFQE---------AQLMG------------- 1084
            :..::::.|...:|.|             .:..|.|:.         .|::|             
plant  1114 NIGALINCVVNNIGFNQGKPVAAFTIYKCLLHWKSFEAERTSVFDRLVQMIGSAIKDEGDNEHLA 1178

  Fly  1085 ----------------LDPDAFLKQKPRSIRHKLVSLTLKRKNKLGEDVRRRLQDDEYTADSYQS 1133
                            |.|.|..:||..      ||.:|..:..:|   .|.......|:.:.::
plant  1179 YWLSNTSTLLFMIQQSLKPGATPQQKTP------VSTSLFGRMAMG---FRSAPSSAETSAAAEA 1234

  Fly  1134 WLQS--RP--------------TSNLEKLHFIIGHGILRAELRDEIYCQICKQLTNNPLKSSHAR 1182
            ...:  ||              |:.:||:     .|::|..|::|:.                  
plant  1235 AAAAVIRPVVAKDPALLFKQQLTAYVEKI-----FGMIRDNLKNELQ------------------ 1276

  Fly  1183 GWILLSLCVGCFAPSEKFVNYLRAFIREGPPGYAPYCEERLKRTFNNGTRNQP-PSW-------- 1238
              .|||||:.  ||.......||:|              |..:|..|   |.| ..|        
plant  1277 --TLLSLCIQ--APRTSTGRSLRSF--------------RSSKTMRN---NSPLDHWNGIYDGLN 1320

  Fly  1239 --LELQATKSKKPIMLPITFMD--GNTKTLLADSATTARELCNQLSDKISLKDQFGFSLYIALFD 1299
              |.........|:::...|:.  ......|.:|....||.|.                      
plant  1321 AILSTLQENFVPPVLIQNIFIQTFSFINVQLFNSLLLRRECCT---------------------- 1363

  Fly  1300 KVSSLGSGGDHVMDAISQCEQYAKEQGAQERNAPWRLFFRKEIFAPWHEPTHDQVATNLIYQQVV 1364
                 .|.|:.|...::..|::..|...:...:.|                 |::      :.:.
plant  1364 -----FSNGEFVKSGLALLEEWCNETTEEYAGSSW-----------------DEL------KHIR 1400

  Fly  1365 RGVKFGEYRCDKEEDLAMIAAQQYFIEYSTDMSMERLFTLLPNFIPDFC--LSGVDKAIERWAAL 1427
            :.|.|            |:..::|.|.|.             :...|.|  ||            
plant  1401 QAVGF------------MVIHKKYRISYD-------------DIAHDLCPILS------------ 1428

  Fly  1428 VLQAYK-KSYYVKDKIAPLKIKEDIVSYAKYKWPLLFSRFYEAYRNSGPNLPKNDVIIAVNWTGV 1491
            |.|.|: .:.|..|......:.:|:::..:    :|.:       ....|...:..::..:.:..
plant  1429 VQQLYRICTLYWDDSYNTRSVSQDVIANMR----VLMT-------EDSNNADSSAFLLDEDSSIP 1482

  Fly  1492 YVVDDQEQVLLELSFPEITAVSSQKTNKVFT 1522
            :..||....:.|..|.|:......:.|..|:
plant  1483 FSADDLSSSMKEKDFAEMKPAEELEENPAFS 1513

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ckNP_001285949.1 MYSc 64..733 CDD:214580 293/684 (43%)
MYSc_Myo7 77..721 CDD:276832 283/659 (43%)
MyTH4 <1138..1245 CDD:214535 26/131 (20%)
B41 1251..1467 CDD:214604 30/220 (14%)
FERM_B-lobe 1355..1439 CDD:271216 14/86 (16%)
FERM_C1_MyoVII 1461..1559 CDD:270019 9/62 (15%)
SH3 1560..1624 CDD:302595
MyTH4 1701..1849 CDD:214535
B41 1856..2068 CDD:214604
FERM_M 1966..2068 CDD:278785
FERM_C2_MyoVII 2064..2159 CDD:270020
XIHNP_194600.2 Myosin_N 12..47 CDD:280832 11/43 (26%)
MYSc 56..738 CDD:214580 294/690 (43%)
MYSc_Myo11 75..726 CDD:276835 283/659 (43%)
Apolipoprotein 893..1041 CDD:279749 33/184 (18%)
DUF4355 893..1011 CDD:290964 27/154 (18%)
Ax_dynein_light <978..1023 CDD:287215 13/80 (16%)
MyosinXI_CBD 1109..1486 CDD:271259 78/527 (15%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 530 1.000 Domainoid score I63
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm8405
orthoMCL 1 0.900 - - OOG6_100101
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.810

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