DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ck and jar

DIOPT Version :9

Sequence 1:NP_001285949.1 Gene:ck / 34882 FlyBaseID:FBgn0000317 Length:2167 Species:Drosophila melanogaster
Sequence 2:NP_001014650.2 Gene:jar / 42889 FlyBaseID:FBgn0011225 Length:1268 Species:Drosophila melanogaster


Alignment Length:1378 Identity:393/1378 - (28%)
Similarity:578/1378 - (41%) Gaps:341/1378 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 IWIEPAS-----GREFDVAIGARVVSAEGRRIQVRDDDGDEVWLAPERRIKAMHAS--SVQGVED 67
            :|:..|:     ||..::......|:...|:...|....|::           |:|  ..|..:|
  Fly     8 VWVRDAAEGYIQGRITEIGAKEFEVTPTDRKYPKRTCHFDDI-----------HSSCDGPQDHDD 61

  Fly    68 MISLGDLHEAGILRNLLIRYKENLIYTYTGSILVAVNPY-QILPIYTGDQIKLYKERKIGELPPH 131
            ...|..|:||..|.||..||.::.||||..:||:||||| :|..:|..|.||.|..|.:||||||
  Fly    62 NCELMLLNEATFLDNLKTRYYKDKIYTYVANILIAVNPYREIKELYAPDTIKKYNGRSLGELPPH 126

  Fly   132 IFAIGDNAYAHMKRYRQDQCIVISGESGAGKTESTKLILQYLAAISGKHSWIEQQILEANPILEA 196
            :|||.|.|...|:.|:..|.|::|||||||||||||.:|:||.........||.:||:|||:|||
  Fly   127 VFAIADKAIRDMRVYKLSQSIIVSGESGAGKTESTKYLLKYLCYSHDSAGPIETKILDANPVLEA 191

  Fly   197 FGNAKTIRNDNSSRFGKYIDIHFSANGVIEGAKIEQYLLEKSRIVSQNHSERNYHVFYCILAGLS 261
            ||||||.||:|||||||:|::|:.|...:.|..|..||||||||.:|:..||||||||.:|||..
  Fly   192 FGNAKTTRNNNSSRFGKFIEVHYDAKCQVVGGYISHYLLEKSRICTQSAEERNYHVFYMLLAGAP 256

  Fly   262 ADEKSRLDLGMAADYKYLTGGNSITCEGR-------------------------DDAAEFSDIRS 301
            ...:.:|.||...||:||:|........:                         ||...|.::..
  Fly   257 QQLRDKLSLGKPDDYRYLSGCTQYFANAKTEQLIPGSQKSKNHQQKGPLKDPIIDDYQHFHNLDK 321

  Fly   302 AMKVLLFSDQEIWEIIKLLAALLHCGNIKYKATVVDNLDATEIPEHI------------NVERVA 354
            |:..|..||.|...|..|:||:||.|||.::          |||:.:            ::...:
  Fly   322 ALGRLGLSDTEKLGIYSLVAAVLHLGNIAFE----------EIPDDVRGGCQVSEASEQSLTITS 376

  Fly   355 GLLGLPIQPLIDALTRRTLFA-----HGETVVSTLSRDQSVDVRDAFVKGIYGRMFVHIVRKINT 414
            ||||:....|..||..|.:.:     .|..::..|...::.:.|||..|.||.|:|..||..||.
  Fly   377 GLLGVDQTELRTALVSRVMQSKGGGFKGTVIMVPLKIYEASNARDALAKAIYSRLFDRIVGLINQ 441

  Fly   415 AIFKPRGTSRNAIGVLDIFGFENFDQNSFEQFCINYANENLQQFFVQHIFKLEQEEYNHEAINWQ 479
            :|  |...|...||||||.|||.|..||||||||||.||.||:||..:|.|.|||.|..|.:|..
  Fly   442 SI--PFQASNFYIGVLDIAGFEYFTVNSFEQFCINYCNEKLQKFFNDNILKNEQELYKREGLNVP 504

  Fly   480 HIEFVDNQDALDLIAIKQLNIMALIDEEARFPKGTDQTMLAKLHKTHGSHKNYLKPKSD------ 538
            .|.|.||||.::||..|...|..|:|||::.||.:.....|::||:..:|.....|:|.      
  Fly   505 EITFTDNQDIIELIEAKSNGIFTLLDEESKLPKPSYSHFTAEVHKSWANHYRLGLPRSSRLKAHR 569

  Fly   539 ---INTSFGLNHFAGVVFYDTRGFLDKNRDTFSPDLLHLVSQSTNKFLRQIFAQDIEMGAETRKR 600
               ....|.:.||||.|.|:|..|::||.|.....|..||.:..|..|:.:|..........:..
  Fly   570 TLRDEEGFLVRHFAGAVCYNTEQFIEKNNDALHASLEGLVQECDNPLLQTLFPSGSSTSVRGKLN 634

  Fly   601 TPTLSTQFRKSLDALMKTLSSCQPFFIRCIKPNELKKPMMFDRGLCCRQLRYSGMMETIRIRRAG 665
            ..::.::|:..|..||:.|......||||||||.......|:..|...||:.||.:..:.:...|
  Fly   635 FISVGSKFKTQLGELMEKLEQNGTNFIRCIKPNSKMIDRQFEGSLALAQLKCSGTISVLELMEHG 699

  Fly   666 YPIRHGFREFVERYRFLIPGVP-----PAHRTDCQAATSRICAVVLGKSDYQLGHTKVFLKDAHD 725
            ||.|..|.:....|:.::|  |     || ||.|:|...   ::.|...|::.|.||||.:....
  Fly   700 YPSRVLFADLYSMYKSVLP--PELVSLPA-RTFCEAMFQ---SLNLSAKDFKFGITKVFFRPGKF 758

  Fly   726 LFLEQERDRVL---TRKILILQRSIRGWVYRRRFLRLRAAAITV-----------------QRFW 770
            :    |.||::   ...:|.:...::.|:.|.|:::....|:.|                 ||..
  Fly   759 V----EFDRIMRSDPENMLAIVAKVKKWLIRSRWVKSALGALCVIKLRNRIIYRNKCVLIAQRIA 819

  Fly   771 KGYAQRKRYRNMRVGYMRLQALIRSRVL--------------------SHRFRHLRGHIVGLQAH 815
            :|:..||::|....|..::.. ||:..|                    :..:|.:...|..::.:
  Fly   820 RGFLARKQHRPRYQGIGKINK-IRTNTLKTIEIASGLKMGREEIISGVNDIYRQIDDAIKKIKMN 883

  Fly   816 ARGYLVRREYGHKMWAVIKIQSHVRRMIAMRRYRKLRL-------EHKQFAEVLQLRKLEEQELL 873
            .|  :.:||. ..|:.|:           |....||.:       |.:|..|..:|||::|....
  Fly   884 PR--ITQREM-DSMYTVV-----------MANMNKLTVDLNTKLKEQQQAEEQERLRKIQEALEA 934

  Fly   874 HRGNKHAREIAEQHYRDRLHELERREIQEQLENRRRVEVNMNIINDAAR-KQEEPVDDGKLVEAM 937
            .|.   |:|..||..|:   |:|.:.::.::|.||:..       :|.| :|||  :|.:...|:
  Fly   935 ERA---AKEAEEQRQRE---EIENKRLKAEMETRRKAA-------EAQRLRQEE--EDRRAALAL 984

  Fly   938 FDFLPDSSSDAPTPHGGRETSVFNDLPHAQNVNQDDIIAPIHISEDEEDLSEFKFQKFAATYFQG 1002
            .:.|...:.|              |..:.|.:.|:                              
  Fly   985 QEQLEKEAKD--------------DAKYRQQLEQE------------------------------ 1005

  Fly  1003 NVNHQYAKKALKHPLLPLHTQGDQLAAQALWITILRFTGDMPEPKYHTMDRMDTTSVM------- 1060
            ..:|:.|.:               ||.::        .|.:.:......:.::..|.|       
  Fly  1006 RRDHELALR---------------LANES--------NGQVEDSPPVIRNGVNDASPMGPNKLIS 1047

  Fly  1061 -SKVTATLGRNFIRSKEFQEAQLMGLDPDAFLKQKPRSIRHKLVSLTLKRKNKLGEDVRRRLQDD 1124
             |:|.:.:...::...|...||...|.                     |:|..|.:         
  Fly  1048 FSQVVSNIASRYLNKSENVRAQQQALG---------------------KQKYDLSK--------- 1082

  Fly  1125 EYTADSYQSWLQSRPTSNLEKLHFIIGHGILRAELRDEI--YCQI-----CKQLTNNPLKSSHAR 1182
                     |..|                    ||||.|  .|.|     |:|..:..||..|| 
  Fly  1083 ---------WKYS--------------------ELRDAINTSCDIELLEACRQEFHRRLKVYHA- 1117

  Fly  1183 GWILLSLCVGCFAPSEKFVNYLRAFIREGPPGYAPYCEERLKRTFNNGTRNQPPSWLELQATKSK 1247
             |              |..|..|..:.|         .||..|:.......|||....:|...:.
  Fly  1118 -W--------------KAKNRKRTTMDE---------NERAPRSVMEAAFKQPPLVQPIQEIVTA 1158

  Fly  1248 KPIMLPITFMDGN 1260
            :.....|.||..|
  Fly  1159 QHRYFRIPFMRAN 1171

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ckNP_001285949.1 MYSc 64..733 CDD:214580 277/725 (38%)
MYSc_Myo7 77..721 CDD:276832 272/700 (39%)
MyTH4 <1138..1245 CDD:214535 25/113 (22%)
B41 1251..1467 CDD:214604 4/10 (40%)
FERM_B-lobe 1355..1439 CDD:271216
FERM_C1_MyoVII 1461..1559 CDD:270019
SH3 1560..1624 CDD:302595
MyTH4 1701..1849 CDD:214535
B41 1856..2068 CDD:214604
FERM_M 1966..2068 CDD:278785
FERM_C2_MyoVII 2064..2159 CDD:270020
jarNP_001014650.2 Myosin_N 7..45 CDD:280832 7/36 (19%)
Myosin_head 59..754 CDD:278492 276/712 (39%)
MYSc_Myo6 71..754 CDD:276833 272/700 (39%)
RILP-like <968..1015 CDD:304877 14/107 (13%)
Myosin-VI_CBD 1160..1246 CDD:293129 4/12 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45466297
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1389at50557
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR13140
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.950

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