DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ck and d

DIOPT Version :9

Sequence 1:NP_001285949.1 Gene:ck / 34882 FlyBaseID:FBgn0000317 Length:2167 Species:Drosophila melanogaster
Sequence 2:NP_001188730.1 Gene:d / 34179 FlyBaseID:FBgn0262029 Length:1426 Species:Drosophila melanogaster


Alignment Length:808 Identity:236/808 - (29%)
Similarity:368/808 - (45%) Gaps:149/808 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    60 SSVQGVEDMISL-GDLHEAGILRNLLIRYKENLIYTYTGSILVAVNPYQILPIYTGDQIKLYKER 123
            ||.:.::|:|.| |.|.|..::|.|..|:.|...:|..|.||:::|||    :..|:.:.|...|
  Fly   470 SSPKDMQDLIHLSGPLTEHAVMRTLQARFNERRYFTNVGPILLSINPY----LDVGNPLTLTSTR 530

  Fly   124 KIGELPPHIFAIGDNAYAHMKRYRQDQCIVISGESGAGKTESTKLILQYLAAISG--------KH 180
            .: .|.|.:..|...|..........|.|::||.||||||.:..|:|:.|.||:|        ||
  Fly   531 AM-PLAPQLQKIVQEAVRQQSETGYPQAIILSGTSGAGKTANAMLMLRQLFAIAGGGPETDAFKH 594

  Fly   181 SWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFSANGVIEGAKIEQYLLEKSRIVSQNH 245
                  :..|..:|.:.|:|||..|..|||.|::|::..: :|.:...||..|.|:::|::....
  Fly   595 ------LAAAFTVLRSLGSAKTTTNSESSRIGQFIEVQVT-DGALYRTKIHCYFLDQTRVIRPLP 652

  Fly   246 SERNYHVFYCILAGLSADEKSRLDLG--MAADYKYLTGGNSITCEGRDDAAEFSDIRSAMKVL-- 306
            .|:|||:||.:|||||.:|:.:|.|.  ..|:.:||.|  .|....::|||.|...::.:.:|  
  Fly   653 KEKNYHIFYQLLAGLSREERQKLHLDGYSPANLRYLRG--DIGQNEQEDAARFQAWKTCLGILGI 715

  Fly   307 LFSDQEIWEIIKLLAALLHCGNIKY---KATVVDNLDATEIPEHINVERVAGLLGLPIQPLIDAL 368
            .|.|     ::::|||:|..||:::   ....||....||:      ..||.|||:|...|...|
  Fly   716 PFLD-----VVRVLAAVLLLGNVQFIDGGGLEVDVKGETEL------NSVASLLGVPPAALFRGL 769

  Fly   369 TRRTLFAHGETVVSTLSRDQSVDVRDAFVKGIYGRMFVHIVRK---------------------- 411
            |.||....|:.|.|......:...||...|.:|.|....|||:                      
  Fly   770 TTRTHNVRGQLVKSVCGDGDANMTRDCLAKALYCRTVATIVRRANSLKRLGSTLGTLSSDSNESV 834

  Fly   412 --------------------------INTAIFKPRGTSRNAIGVLDIFGFENFDQNS-FEQFCIN 449
                                      :|.|:  ...||...||:||:||||....:: .|..|||
  Fly   835 HNQADVASQHASTIGGGNAGSKSMAALNNAV--RHATSDGFIGILDMFGFEEPSPHAHLEHLCIN 897

  Fly   450 YANENLQQFFVQHIFKLEQEEYNHEAINWQ-HIEFVDNQDALDLIAIKQLNIMALIDEEARFPKG 513
            ...|.:|.|:..||||...|....|.|... .:::|||...:|||:..:..:::::|.|... :|
  Fly   898 LCAETMQHFYNTHIFKSSVESCRDEGIVCDTEVDYVDNVPCIDLISSLRTGLLSMLDAECSV-RG 961

  Fly   514 TDQTMLAKLHKTH-GSHKNYLKPKSDIN--TSFGLNHFAGVVFYDTRGFLDKNRDTFSPDLLHLV 575
            |.::.:.||...| .|.:...||.::.:  ..|.:.||||.|.|||..|||.|||....||:.:.
  Fly   962 TAESYVTKLKVQHRSSTRLETKPTAEPHDPRMFLIRHFAGRVEYDTTDFLDTNRDVVPDDLVGVF 1026

  Fly   576 SQSTNKF----------LRQIFAQ-----------------DIEMGAETRKRTPTLSTQFRKSLD 613
            .:.|..|          |:.::||                 |:..|.|.   ..||:..|...||
  Fly  1027 YKHTCNFGFATHLFGSELKALYAQQQAPRGLSFRISPTSHSDLLNGDEP---VSTLTQDFHTRLD 1088

  Fly   614 ALMKTLSSCQPFFIRCIKPNELKKPMMFDRGLCCRQLRYSGMMETIRIRRAGYPIRHGFREFVER 678
            .|::||...:|.|:|||:.|..:....|||....||:|...::||:.:..:|:|.|..|::|..|
  Fly  1089 NLLRTLVHARPHFVRCIRSNGTEAARSFDRATVVRQIRSLQVLETVNLMASGFPHRMRFKQFNAR 1153

  Fly   679 YRFLIPGVPPAHRTDCQAATSRICAVVLGKSDYQL----------------GHTKVFLKDAHDLF 727
            ||.|.| .....|::.:|...  |.::|   .|.:                |...|||.:.....
  Fly  1154 YRMLAP-FRLLRRSEDKALED--CQLIL---KYAMEQPPVLDGSVTLAWAPGKRHVFLSEGIRQH 1212

  Fly   728 LEQERDRVLTRKILILQRSIRGWVYRRR 755
            ||..|..:..:...::|.:.|||.:|::
  Fly  1213 LEHLRTEIRHKSATLMQATWRGWWWRKK 1240

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ckNP_001285949.1 MYSc 64..733 CDD:214580 228/780 (29%)
MYSc_Myo7 77..721 CDD:276832 219/754 (29%)
MyTH4 <1138..1245 CDD:214535
B41 1251..1467 CDD:214604
FERM_B-lobe 1355..1439 CDD:271216
FERM_C1_MyoVII 1461..1559 CDD:270019
SH3 1560..1624 CDD:302595
MyTH4 1701..1849 CDD:214535
B41 1856..2068 CDD:214604
FERM_M 1966..2068 CDD:278785
FERM_C2_MyoVII 2064..2159 CDD:270020
dNP_001188730.1 MYSc 476..1217 CDD:214580 228/777 (29%)
MYSc_Myo20 488..1206 CDD:276847 219/754 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45466237
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR13140
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

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