DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ck and ninaC

DIOPT Version :9

Sequence 1:NP_001285949.1 Gene:ck / 34882 FlyBaseID:FBgn0000317 Length:2167 Species:Drosophila melanogaster
Sequence 2:NP_523503.2 Gene:ninaC / 34012 FlyBaseID:FBgn0002938 Length:1501 Species:Drosophila melanogaster


Alignment Length:1189 Identity:272/1189 - (22%)
Similarity:494/1189 - (41%) Gaps:217/1189 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    66 EDMISLGDLHEAGILRNLLIRYKENLIYTYTGSILVAVNPYQILPIYTGDQIKLYKERKIGELPP 130
            ||:.:|.:..:..|:.:|..|......|::.|.||:::|..:|...:..:....|:.:...|..|
  Fly   335 EDLAALENPVDENIIESLRHRILMGESYSFIGDILLSLNSNEIKQEFPQEFHAKYRFKSRSENQP 399

  Fly   131 HIFAIGDNAYAHMKRYRQDQCIVISGESGAGKTESTKLILQYLAAISGKHSWIEQQILEANPILE 195
            |||::.|.||..|..:::.|.||:||||.:||:.:.:|::::|..:...:.....::..:...:.
  Fly   400 HIFSVADIAYQDMLHHKEPQHIVLSGESYSGKSTNARLLIKHLCYLGDGNRGATGRVESSIKAIL 464

  Fly   196 AFGNAKTIRNDNSSRFGKYIDIHFSANGVIEGAKIEQYLLEKSRIVSQNHSERNYHVFYCILAGL 260
            ...||.|..|::|:|......:.|...|.:.||....|:|||.|:.:.:.::.|:|:||.....:
  Fly   465 MLVNAGTPVNNDSTRCVLQYCLTFGKTGKMSGAVFNMYMLEKLRVATTDGTQHNFHIFYYFYDFI 529

  Fly   261 SADEKSRLDLGMAAD--YKYLTGGNSITCE----GRDD----AAEFSDIRSAMKVLLFSDQEIWE 315
            :...:.: :..:.||  |:||.....:...    .|||    ...:.:..:.::.:.|:.:::..
  Fly   530 NQQNQLK-EYNLKADRNYRYLRVPPEVPPSKLKYRRDDPEGNVERYREFENILRDIDFNHKQLET 593

  Fly   316 IIKLLAALLHCGNIKY----KATVVDNLDATEIPEHINVERVAGLLGLPIQPLIDALTRRTLFAH 376
            :.|:|||:|:.|||::    |...|:|.|.        |.|:|.||.:..:..:.:||...:...
  Fly   594 VRKVLAAILNIGNIRFRQNGKYAEVENTDI--------VSRIAELLRVDEKKFMWSLTNFIMVKG 650

  Fly   377 GETVVSTLSRDQSVDVRDAFVKGIYGRMFVHIVRKINTAIFKPRGT--SRNAIGVLDIFGFENFD 439
            |.......:.:::.|.|||....:|.|:...|:.:||..:..||..  ..|||.:.|:||||.|:
  Fly   651 GIAERRQYTTEEARDARDAVASTLYSRLVDFIINRINMNMSFPRAVFGDTNAIIIHDMFGFECFN 715

  Fly   440 QNSFEQFCINYANENLQQFFVQHIFKLEQEEYNHEAINWQHIEFVDNQDALDLIAIKQLNIMALI 504
            :|..||..||..||.:|..:.|.||..|..|...|.|:..::.|.||:.|||.:..|...:..:|
  Fly   716 RNGLEQLMINTLNEQMQYHYNQRIFISEMLEMEAEDIDTINLNFYDNKTALDNLLTKPDGLFYII 780

  Fly   505 DEEARFPKGTDQTMLAKLHKTHGSHKNYLKPKSDINTSFGLNHFAGVVFYDTRGFLDKNRDTFSP 569
            |:.:|  ...||.::  :.:....|..::|..:  .|...:.|:.|.:.||||.|.|.|||...|
  Fly   781 DDASR--SCQDQDLI--MDRVSEKHSQFVKKHT--ATEISVAHYTGRIIYDTRAFTDINRDFVPP 839

  Fly   570 DLLHLVSQSTNKFLRQIFAQDIEMGA-------------ETRKRT-----------------PTL 604
            :::.....|.::.:..:|...:....             |:.:::                 .||
  Fly   840 EMIETFRSSLDESIMLMFTNQLTKAGNLTMPFEAVQHKDESERKSYALNTLSAGCISQVNNLRTL 904

  Fly   605 STQFRKSLDALMKTLS---SCQPFFIRCIKPNELKKPMMFDRGLCCRQLRYSGMMETIRIRRAGY 666
            :..||.:...|:|.||   :....|:|||:.:...||..|...:..:|::..|:::|:..|:.|:
  Fly   905 AANFRFTCLTLLKMLSQNANLGVHFVRCIRADLEYKPRSFHSDVVQQQMKALGVLDTVIARQKGF 969

  Fly   667 PIRHGFREFVERYRFL-IPGVPPAHRT--DCQAATSRICAVVLGKSDYQLGHTKVFLKDAHDLFL 728
            ..|..|.||:.||:|| .....|...|  :|     |:..:.|....:.||.|||||:..:|.||
  Fly   970 SSRLPFDEFLRRYQFLAFDFDEPVEMTKDNC-----RLLFLRLKMEGWALGKTKVFLRYYNDEFL 1029

  Fly   729 EQERDRVLTRKILILQRSIRGWVYRRR-----FLRL--------RAAAITVQRFWKGYAQRKRYR 780
            .:..: :..:|::.:|..:|..:.|:|     ..:|        ..||..:|:.::|:..|.|..
  Fly  1030 ARLYE-LQVKKVIKVQSMMRALLARKRVKGGKVFKLGKKGPEHHDVAASKIQKAFRGFRDRVRLP 1093

  Fly   781 ---NMRVGYMRLQALIRSRVLSHRFR---------HLRG----HIVGLQAHARGYLVRREYG-HK 828
               |.:.|.:........|..:.::|         |.|.    ..|.|......|..|...| :|
  Fly  1094 PLVNEKSGQLNENTADFIRPFAKKWREKSIFQVLLHYRAARFQDFVNLSQQVHIYNQRMVAGLNK 1158

  Fly   829 MWAVIKIQSHVRRMIAMRRYRKLRL--------------------------------EHKQFAEV 861
            ....:..:     .|.||.....:|                                ..:.|...
  Fly  1159 CTRAVPFE-----RINMREVNSSQLGPLPVPIKKMPFRLDQIPFYDTQYMVDPANSISRQAFPNQ 1218

  Fly   862 LQLRKLEEQE----LLHRG----------NKHAREIAEQHYRDRLHELERREIQ------EQLEN 906
            |..:.:|:.|    .|.|.          |.:.:|.|.|...||:.|.:....|      :|| .
  Fly  1219 LLTQHMEDDEPWDSPLQRNPSMTSCALTYNAYKKEQACQTNWDRMGESDNIYNQGYFRDPQQL-R 1282

  Fly   907 RRRVEVNMNIINDAARKQEEPVDD--------GKLVEAMFDFLPDSSSDAPTPHGGRETSVFNDL 963
            |.::::|||..|:|........::        |....::..:........|.|    .::.:.:.
  Fly  1283 RNQMQMNMNAYNNAYNSYNSNYNNQNWGVHRSGSRRNSLKGYAAPPPPPPPMP----SSNYYRNN 1343

  Fly   964 PHAQNVN---------QDDIIAPIHISEDEEDLSE-----FKFQKFAATYFQGNVNHQYAKKALK 1014
            |:.|..|         .|.:....:::.:|.|.||     ||.......|.:|:..:.|.....:
  Fly  1344 PNQQQRNYQQRSSYPPSDPVRELQNMARNEGDNSEDPPFNFKAMLRKTNYPRGSETNTYDFNNRR 1408

  Fly  1015 HPLLPLHTQGDQLAAQALWITILRFTGDMPEPKYHTMDRMDTTS----------------VMSKV 1063
            .     ...|||...|.   ..||.||    .:|...:..:::|                .:.:.
  Fly  1409 G-----SDSGDQHTFQP---PKLRSTG----RRYQDDEGYNSSSGNYGVSRKFGQQQRAPTLRQS 1461

  Fly  1064 TATLGRNF--IRSKEFQEA 1080
            .|::||:|  ..::.|:||
  Fly  1462 PASVGRSFEDSNARSFEEA 1480

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ckNP_001285949.1 MYSc 64..733 CDD:214580 189/718 (26%)
MYSc_Myo7 77..721 CDD:276832 182/695 (26%)
MyTH4 <1138..1245 CDD:214535
B41 1251..1467 CDD:214604
FERM_B-lobe 1355..1439 CDD:271216
FERM_C1_MyoVII 1461..1559 CDD:270019
SH3 1560..1624 CDD:302595
MyTH4 1701..1849 CDD:214535
B41 1856..2068 CDD:214604
FERM_M 1966..2068 CDD:278785
FERM_C2_MyoVII 2064..2159 CDD:270020
ninaCNP_523503.2 STKc_myosinIII_N_like 9..282 CDD:270785
S_TKc 16..282 CDD:214567
MYSc 327..1034 CDD:214580 189/718 (26%)
MYSc_Myo21 346..1022 CDD:276848 182/695 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG4229
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

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