DRSC/TRiP Functional Genomics Resources

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Protein Alignment ck and Myo3b

DIOPT Version :9

Sequence 1:NP_001285949.1 Gene:ck / 34882 FlyBaseID:FBgn0000317 Length:2167 Species:Drosophila melanogaster
Sequence 2:NP_796350.2 Gene:Myo3b / 329421 MGIID:2448580 Length:1333 Species:Mus musculus


Alignment Length:833 Identity:315/833 - (37%)
Similarity:464/833 - (55%) Gaps:107/833 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    53 RIKAMHASSVQGVE---------DMISLGDLHEAGILRNLLIRYKENLIYTYTGSILVAVNPYQI 108
            |.:.||......||         |:::|..|.|..|:..|..||.:.|||||.|.||:|:||:|.
Mouse   340 RHERMHTGRPHRVEDAGKCCLEDDLVNLEVLDEDTIIYWLQKRYADALIYTYVGDILIALNPFQN 404

  Fly   109 LPIYTGDQIKLYKERKIGELPPHIFAIGDNAYAHMKRYRQDQCIVISGESGAGKTESTKLILQYL 173
            |.||:....:||...|....||||||..||||..:..:.:|||||||||||:|||||..||:|:|
Mouse   405 LSIYSPQFSRLYHGVKRSSNPPHIFASADNAYQCLVTFSKDQCIVISGESGSGKTESAHLIVQHL 469

  Fly   174 AAISGK--HSWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFSANGVIEGAKIEQYLLE 236
            ..: ||  :..:.|:||:.|.::||||||:|..||||||||||:::.|:..|.:.||:|.:||||
Mouse   470 TFL-GKADNQTLRQKILQVNSLVEAFGNARTAINDNSSRFGKYLEMMFTPTGAVMGARISEYLLE 533

  Fly   237 KSRIVSQNHSERNYHVFYCILAGLSADEK-SRLDLGMAADYKYLTGG-----NSITCEGRDDAAE 295
            |||::.|...|:|:|:||.|.|||...:| :...|......:|:.|.     ..||.: .....:
Mouse   534 KSRVIQQAAGEKNFHIFYYIYAGLYHQKKLAEFRLPEEKPPRYIAGETERVMQDITSK-ESYRTQ 597

  Fly   296 FSDIRSAMKVLLFSDQEIWEIIKLLAALLHCGNIKYKA-TVVDNLDATEIPEHINVERVAGLLGL 359
            |..|:...|::.|:|:|:..:.::||.:|:.|:|::.| :.....|.:|:|....:|..|.:|.:
Mouse   598 FEAIQHCFKIIGFADKEVHSVYRILAGILNIGSIEFAAISSQHQTDKSEVPNPEALENAACVLCI 662

  Fly   360 PIQPLIDALTRRTLFAHGETVVSTLSRDQSVDVRDAFVKGIYGRMFVHIVRKINTAIFKP----- 419
            ..:.|.:|||...:...|||:|...:.|::.|||||..|.:|||:|..||.:||| :.:|     
Mouse   663 SSEELQEALTSHCVVTRGETIVRANTVDRAEDVRDAMSKALYGRLFSWIVNRINT-LLQPDKNIC 726

  Fly   420 RGTSRNAIGVLDIFGFENFDQNSFEQFCINYANENLQQFFVQHIFKLEQEEYNHEAINWQHIEFV 484
            ....|..:|:|||||||:|.:|||||.|||.|||.:|.:|.||:|.|||.||.:|.::...:::.
Mouse   727 SAEDRMNVGILDIFGFEDFQRNSFEQLCINIANEQIQYYFNQHVFALEQMEYKNEGVDAVLVQYE 791

  Fly   485 DNQDALDLIAIKQLNIMALIDEEARFPKGTDQTMLAKLHKTHGSHKNYLKPKSDINTSFGLNHFA 549
            ||:..||:...|.|.::||:|||:|||:|||||::.|. :.:...|.:.:||. :...||:.|:|
Mouse   792 DNRPLLDMFLQKPLGLLALLDEESRFPQGTDQTLVDKF-EDNLRCKFFWRPKG-VELCFGIQHYA 854

  Fly   550 GVVFYDTRGFLDKNRDTFSPDLLHLVSQSTNKFLRQIFAQDI-----------EMGAETRKRTP- 602
            |.|.||..|.|:|||||...|::.::..|.||.|:|:|:..:           ::.|.:|...| 
Mouse   855 GPVLYDASGVLEKNRDTLPADVVVVLRTSENKLLQQLFSIPLTKTGNLAQTRAKITASSRSLPPH 919

  Fly   603 --------------------------TLSTQFRKSLDALMKTLSSCQPFFIRCIKPNELKKPMMF 641
                                      |:::.||.||..|:..:...||.||||||||:.:|.:.|
Mouse   920 FSAGRAKVDTLEVIRHPEETTNMKRQTMASYFRYSLMDLLSKMVVGQPHFIRCIKPNDDRKALQF 984

  Fly   642 DRGLCCRQLRYSGMMETIRIRRAGYPIRHGFREFVERYRFL---IPGVPPAHRTDCQAATSRICA 703
            .:.....|||.:|::||:.|||.||..|..|.|||:||.:|   ....|||::..|.|       
Mouse   985 SQDRVLAQLRSTGILETVSIRRQGYSHRIFFEEFVKRYYYLAFRAHQTPPANKESCVA------- 1042

  Fly   704 VVLGKS---DYQLGHTKVFLKDAH----DLFLEQERDRVLTRKILILQRSIRGWVYRRRFLRLR- 760
             :|.||   .:.||.||||||..|    :|.|.:...||     ::||...:||:..||:.|.: 
Mouse  1043 -ILEKSRLDHWVLGKTKVFLKYYHVEQLNLLLREVMGRV-----VMLQAYTKGWLGARRYKRAKE 1101

  Fly   761 ---AAAITVQRFWKGYAQRKRYRNMRVGYMRLQALIRSRVLSHRFRHLRGHIV 810
               ..|||:|..|:||..|::.:.            |||..|....|:  |.|
Mouse  1102 KREKGAITIQSAWRGYDARRKLKQ------------RSRRRSESEAHI--HTV 1140

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ckNP_001285949.1 MYSc 64..733 CDD:214580 288/739 (39%)
MYSc_Myo7 77..721 CDD:276832 277/701 (40%)
MyTH4 <1138..1245 CDD:214535
B41 1251..1467 CDD:214604
FERM_B-lobe 1355..1439 CDD:271216
FERM_C1_MyoVII 1461..1559 CDD:270019
SH3 1560..1624 CDD:302595
MyTH4 1701..1849 CDD:214535
B41 1856..2068 CDD:214604
FERM_M 1966..2068 CDD:278785
FERM_C2_MyoVII 2064..2159 CDD:270020
Myo3bNP_796350.2 STKc_myosinIIIB_N 20..310 CDD:270808
S_TKc 43..309 CDD:214567
MYSc 362..1069 CDD:214580 284/719 (39%)
MYSc_Myo3 373..1062 CDD:276830 277/701 (40%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG4229
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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