DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ck and Myo1e

DIOPT Version :10

Sequence 1:NP_523571.1 Gene:ck / 34882 FlyBaseID:FBgn0000317 Length:2167 Species:Drosophila melanogaster
Sequence 2:NP_775124.1 Gene:Myo1e / 25484 RGDID:3144 Length:1107 Species:Rattus norvegicus


Alignment Length:1059 Identity:337/1059 - (31%)
Similarity:546/1059 - (51%) Gaps:121/1059 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    58 HASSVQGVEDMISLGDLHEAGILRNLLIRYKENLIYTYTGSILVAVNPYQILPIYTGDQIKLYKE 122
            |.....||:||:.|..:.|:.|:.||..||.::.|:||.||:|::|||::.:|.:...:|::|:.
  Rat    14 HNVKHSGVDDMVLLSKITESSIVENLKKRYMDDYIFTYIGSVLISVNPFKQMPYFGEKEIEMYQG 78

  Fly   123 RKIGELPPHIFAIGDNAYAHMKRYRQDQCIVISGESGAGKTESTKLILQYLAAISG---KHSWIE 184
            ....|.||||:|:.|:.|.:|...|::||::||||||||||.:.|.|:.|::.:||   |...::
  Rat    79 AAQYENPPHIYALADSMYRNMIIDRENQCVIISGESGAGKTVAAKYIMSYVSRVSGGGPKVQHVK 143

  Fly   185 QQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFSANGVIEGAKIEQYLLEKSRIVSQNHSERN 249
            ..||::||:|||||||||:||:||||||||.:|.||..|..:|.||..:||||||:|.:|..||:
  Rat   144 DIILQSNPLLEAFGNAKTVRNNNSSRFGKYFEIQFSPGGEPDGGKISNFLLEKSRVVMRNPGERS 208

  Fly   250 YHVFYCILAGLSADEKSRLDLGMAADYKYLTGGNSITCEGRDDAAEFSDIRSAMKVL-LFSDQEI 313
            :|:||.::.|.|.::|..|.:.....|.||:...|...:..||..:|.:...||.|: :||:::.
  Rat   209 FHIFYQLIEGASPEQKQSLGITSMDYYYYLSLSGSYKVDDIDDKRDFQETLHAMNVIGIFSEEQT 273

  Fly   314 WEIIKLLAALLHCGNIKYKATVVDNLDATEIPEHINVERVAGLLGLPIQPLIDALTRRTLFA--- 375
            . :::::|.:||.|||.:|.  |.|..|.|..|.:...  |.|||:....|.:.||.|.:.:   
  Rat   274 L-VLQIVAGILHLGNINFKE--VGNYAAVESEEFLAFP--AYLLGINQDRLKEKLTSRQMDSKWG 333

  Fly   376 -HGETVVSTLSRDQSVDVRDAFVKGIYGRMFVHIVRKINTAIFKPRGTSRNAIGVLDIFGFENFD 439
             ..|::..||:.:|:...|||..|.::.|:|..:|..||.|:.|..  ....||||||:|||.|.
  Rat   334 GKSESIHVTLNVEQACYTRDALAKALHARVFDFLVDSINKAMEKDH--EEYNIGVLDIYGFEIFQ 396

  Fly   440 QNSFEQFCINYANENLQQFFVQHIFKLEQEEYNHEAINWQHIEFVDNQDALDLIAIKQLN---IM 501
            :|.|||||||:.||.|||.|::...|.|||||..|.|.|..||:.:|:...|||..| :|   ||
  Rat   397 KNGFEQFCINFVNEKLQQIFIELTLKAEQEEYVQEGIRWTPIEYFNNKIVCDLIESK-VNPPGIM 460

  Fly   502 ALIDEEA----RFPKGTDQTMLAKLHKTHGSHKNYLKPKSDINTSFGLNHFAGVVFYDTRGFLDK 562
            :::|:..    ...:|.|||:|.||....|||:::    :..|..|.::|:||.|.||..||.::
  Rat   461 SILDDVCATMHAVGEGADQTLLQKLQMQIGSHEHF----NSWNQGFIIHHYAGKVSYDMDGFCER 521

  Fly   563 NRDTFSPDLLHLVSQSTNKFLRQIFAQDIEMGAETRKRTPTLSTQFRKSLDALMKTLSSCQPFFI 627
            |||....||:.|:..|...|::.:|.::::  |:.:.|..|..::.:|..:.|:.||..|.|.:|
  Rat   522 NRDVLFMDLIELMQSSELPFIKSLFPENLQ--ADKKGRPTTAGSKIKKQANDLVSTLMKCTPHYI 584

  Fly   628 RCIKPNELKKPMMFDRGLCCRQLRYSGMMETIRIRRAGYPIRHGFREFVERYRFLIPGVPPAHRT 692
            |||||||.|||..::......|:.|.|:.|.||:|||||..|..|::|::||..|.....|..|.
  Rat   585 RCIKPNETKKPKDWEESRVKHQVEYLGLKENIRVRRAGYAYRRVFQKFLQRYAILTKATWPVWRG 649

  Fly   693 D-CQAATSRICAVVLGKSDYQLGHTKVFLKDAHDLFLEQERDRVLTRKILILQRSIRGWVYRRRF 756
            | .|.....:.:|.:....:|||.:|||:|....|||.:|          :.:|...|:      
  Rat   650 DEKQGVLHLLQSVNMDSDQFQLGRSKVFIKAPESLFLLEE----------MRERKYDGY------ 698

  Fly   757 LRLRAAAITVQRFWKGYAQRKRYRNMRVGYMRLQALIRSRVLSHRFRHLRGHIVGLQAH--ARGY 819
                  |..:|:.|:.:..||:|..||.....|....:.|..:...|:..|..:|::.|  .:.:
  Rat   699 ------ARVIQKTWRKFVARKKYVQMREDASDLLLNKKERRRNSINRNFIGDYIGMEEHPELQQF 757

  Fly   820 LVRREYGHKMWAVIKIQSHVRRMIAMRR---------YRKLRLEHKQ------FAEVLQLRKLEE 869
            :.:||   |:.....:..:.||...::|         |...|.:.||      ..|||: ||:|.
  Rat   758 VGKRE---KIDFADIVTKYDRRFKGVKRDLLLTPKCLYLIGREKVKQGPDKGLVKEVLK-RKIEV 818

  Fly   870 QELLHRGNKHARE----IAEQHYRDRLHELERRE----IQEQLENRRRVEVNMNIINDAARKQEE 926
            :.:|.......::    :.||.|...|..:.:.|    :.::.|.:.:.::.:...|....|.::
  Rat   819 ERILSVSLSTMQDDIFILHEQEYDSLLESVFKTEFLSLLTKRYEEKTQKQLPLKFSNTLELKLKK 883

  Fly   927 PVDDGKLVEAMFDFLPDSSSDAPTPHGGRETSV---FNDLPHAQNVNQDDIIAPIHISED-EEDL 987
            .           ::.|.|:.      |.|:...   |.||...:..|:   :..:.|... .::.
  Rat   884 E-----------NWGPWSAG------GSRQVQFYQGFGDLAILKPSNK---VLQVSIGPGLPKNA 928

  Fly   988 SEFKFQKFAATYFQGNVNHQYAKKALKHP-------------LLPLHTQGDQLAAQ-ALWITILR 1038
            ...:....::..:.|..|:.|..:|...|             :.|....|:|.:.| :|:.::.|
  Rat   929 RPTRRNTVSSRGYSGGTNNNYPMRAAPAPPGCHRNGLTRNQFVHPPRASGNQRSNQKSLYTSMAR 993

  Fly  1039 FTGDMPEPKYHTMDRMDTT 1057
              ..:|..:....||:..|
  Rat   994 --PPLPRQQSTGSDRLSQT 1010

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ckNP_523571.1 MYSc_Myo7 77..721 CDD:276832 260/659 (39%)
MyTH4 <1138..1245 CDD:214535
FERM1_F1_Myosin-VII 1249..1347 CDD:340612
B41 1251..1467 CDD:214604
FERM_C1_MyoVII 1461..1559 CDD:270019
SH3 1560..1624 CDD:473055
MyTH4 1701..1849 CDD:214535
FERM2_F1_Myosin-VII 1854..1951 CDD:340613
B41 1856..2068 CDD:214604
FERM_C2_MyoVII 2064..2159 CDD:270020
Myo1eNP_775124.1 MYSc_Myo1 33..679 CDD:276829 260/659 (39%)
Actin-binding. /evidence=ECO:0000255 581..591 7/9 (78%)
Myosin_TH1 719..920 CDD:461801 40/224 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 920..1052 16/93 (17%)
SH3_MyoIe_If_like 1055..1106 CDD:212761
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.