DRSC/TRiP Functional Genomics Resources

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Protein Alignment ck and Myo16

DIOPT Version :9

Sequence 1:NP_001285949.1 Gene:ck / 34882 FlyBaseID:FBgn0000317 Length:2167 Species:Drosophila melanogaster
Sequence 2:XP_008769606.1 Gene:Myo16 / 192253 RGDID:621561 Length:1934 Species:Rattus norvegicus


Alignment Length:1152 Identity:280/1152 - (24%)
Similarity:474/1152 - (41%) Gaps:302/1152 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    66 EDMISLGDLHEAGILRNLLIRYKENLIYTYTGSILVAVNPYQILPIYTGDQIKLYKE---RKIGE 127
            :|:.:|.:|:::.:|..:..|:..:.|:|:.|.|.:.|||::.||||:....::|..   ::...
  Rat   426 DDLATLSELNDSSLLYEIQKRFGNDQIHTFIGDIFLLVNPFKELPIYSTVVSQMYLSPTGQRSPS 490

  Fly   128 LPPHIFAIGDNAYAHMKRYRQDQCIVISGESGAGKTESTKLILQYLAA-ISGKHSWIEQQILEAN 191
            ||||:|:..:.|:..:.:.|:.|.|::|||.|:|||:::|.|:::|.: .|...:..:.:...|.
  Rat   491 LPPHLFSCAERAFHRLFQERRPQNIILSGERGSGKTQASKQIMKHLTSRASSSCTMFDSRFKHAI 555

  Fly   192 PILEAFGNAKTIRNDNSSRFGKYIDIHF-SANGVIEGAKIEQYLLEKSRIVSQNHSERNYHVFYC 255
            .||||||:|||..|:.||...:|.::.| .....:.||:|..|:|||.|:|:|...:.::.:|..
  Rat   556 CILEAFGHAKTTLNNVSSCLIQYWELQFCQRRKHVTGARISTYMLEKPRLVAQPPGQGSFLIFSW 620

  Fly   256 ILAGLSADEKSRLDLGMAADYKYLTGG---NSITCEGRDDAAEFSDIRSAMKVLLFSDQEIWEII 317
            ::.||||:||..|.|.....::|::.|   :..|.|...:....:|::.|:.|:.||..|:..:.
  Rat   621 LMDGLSAEEKCGLHLSNFCAHRYVSQGMREDVSTAERSLNKERLADLKHALNVIGFSALEVENLF 685

  Fly   318 KLLAALLHCGNIKYKATVVDNLDATEIPEHINVERVAGLLGLPIQPLIDALTRRTLFAHGETVVS 382
            .:|:|:||.|:|::  |.:...|:..:.:...:|:||.:|.:....|..|||....:..|:.::.
  Rat   686 AILSAILHIGDIQF--TALTEADSAFVSDLQLLEQVADMLQVSTDELASALTTDIQYFKGDVIIR 748

  Fly   383 TLSRDQSVDVRDAFVKGIYGRMFVHIVRKINTAI-----FKPRGTSRNAIGVLDIFGFENFDQNS 442
            ..:...:...||...|.:|.|:|..::..:|..:     :|...|.  .||:|||||||.|.:|.
  Rat   749 RHTTQIAAFYRDLLAKSLYSRLFGFLINTVNCCLQSQDEYKSLQTL--DIGILDIFGFEEFQKNE 811

  Fly   443 FEQFCINYANENLQQFFVQHIFKLEQEEYNHEAINWQHIEFVDNQ-DALDLIAIKQLNIMALIDE 506
            |||.|:|..||.:..:..:.:|..||.|...|.:..:......|| ..||....|.....:|:||
  Rat   812 FEQLCVNLTNEKMHHYIQEVLFLQEQTECVQEGVAMETACSPGNQAGVLDFFFQKPSGFFSLLDE 876

  Fly   507 EARFPKGTDQTMLAKLH-KTHGSHKNYL-KPKSDIN---------TSFGLNHFAGVVFYDTRGFL 560
            |::.....:..:..||. ....|:.|.: .|..|.|         .:|.:.|:||.|.|:.||.:
  Rat   877 ESQAIWSVEPNLPRKLQGLLESSNTNAVYSPMKDGNGNVAFKGQGAAFTVMHYAGRVTYEIRGAV 941

  Fly   561 DKNRDTFSPDLLHLVSQSTNKFLRQIFAQD----------------------------------- 590
            ::|:|:.|.:||.::..|.|..:..:|...                                   
  Rat   942 ERNKDSLSQNLLFVMKTSENVVISHLFQSKLSPTGSLISSYPSFKFGGHKSSLLSKRIASSMVGV 1006

  Fly   591 ----IEMGAETRKR-------------TPTLSTQFRKSLDALMKTLSSCQPFFIRCIKPNELKKP 638
                :|:....:|:             ..|.::|..|||..:...|....|.||.|:|||..:.|
  Rat  1007 NKNYLELSKLLKKKGTCTFLQRLERGDPATTASQLTKSLADITAKLQKGSPHFILCVKPNTSQLP 1071

  Fly   639 MMFDRGLCCRQLRYSGMMETIRIRRAGYPIRHGFREFVERYRFLI-------PGVPPAHRTDCQA 696
            .:||......||:|.|::..:|:.|.|||:|..|.:|:.||..|.       .|.|...|     
  Rat  1072 GVFDHFYVSAQLQYLGVLGLVRLFRYGYPVRPSFEDFLSRYEPLASVLLGEKKGQPAEER----- 1131

  Fly   697 ATSRICAVVLGK---SDYQLGHTKVFLK-----DAHDLFLEQERDRVLTRKILILQRSIRGWVYR 753
                 |.:||.:   ..:|:|..|||||     ...||:|:.:      |||:..|:.|||::  
  Rat  1132 -----CRLVLQRCKLQGWQMGVHKVFLKYWQVDQLGDLWLQMQ------RKIVTCQKVIRGFL-- 1183

  Fly   754 RRFLRLRAAAITVQRFWKGYAQRKRYRNMRVGYMRLQALIRSRVLSHRFRHLRGHIVGLQAHARG 818
                                                                          ||.
  Rat  1184 --------------------------------------------------------------ARQ 1186

  Fly   819 YLVRREYGHKMWAVIKIQSHVRRM--IAMRRYRKLRLEHKQFAEVLQLRKLEEQELLHRGNKHAR 881
            :|::| ...|...|..|:|.::..  :|::.|..|         |:|               :|.
  Rat  1187 HLLQR-MSIKQQEVTSIKSFLQSTEDMALKTYDAL---------VIQ---------------NAS 1226

  Fly   882 EIAEQHYRDRLHELERREIQEQLENRRRVEVNMNIINDA----ARKQEEPVDDGKLVEAMFDFLP 942
            :||.:|  |||    |:|:.......|:.|......:..    |.....||.  ..|:::...|.
  Rat  1227 DIAREH--DRL----RKEVHAAYHRNRQEEGTKRAEDQGGCRHAHSNSVPVP--MAVDSLAQALA 1283

  Fly   943 DSSSDAPTPHGGRETSVFN-----DLPHAQ---------------NVNQDDIIAPIHISED---- 983
            ..||.:|:.|     |||:     .||..:               :.:.:.:.|.:..::|    
  Rat  1284 GPSSRSPSLH-----SVFSMDDSTGLPSPRKQPPPKPKRDPNTRLSASYEAVSACLSATKDAASE 1343

  Fly   984 --------EEDLSEFK-----------FQKFAATYFQ----------GNVNHQYAKKALK----- 1014
                    .:|.|..|           ..|.:.:|.:          |.|...:|...|.     
  Rat  1344 ALTRPRPHSDDYSTMKKIPPRKPKRSPHTKLSGSYEEIWGPRPSGTMGQVGKHHAPGTLGVQWAS 1408

  Fly  1015 -------HPLLPLH---TQGDQLAAQALWITILRFTGDMPEPKYHTM 1051
                   .|.||||   .|||.              .|..||.|..|
  Rat  1409 PDSMPQCTPQLPLHLPLPQGDY--------------DDDGEPVYIEM 1441

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ckNP_001285949.1 MYSc 64..733 CDD:214580 211/758 (28%)
MYSc_Myo7 77..721 CDD:276832 203/730 (28%)
MyTH4 <1138..1245 CDD:214535
B41 1251..1467 CDD:214604
FERM_B-lobe 1355..1439 CDD:271216
FERM_C1_MyoVII 1461..1559 CDD:270019
SH3 1560..1624 CDD:302595
MyTH4 1701..1849 CDD:214535
B41 1856..2068 CDD:214604
FERM_M 1966..2068 CDD:278785
FERM_C2_MyoVII 2064..2159 CDD:270020
Myo16XP_008769606.1 ANKYR 86..332 CDD:223738
ANK 89..190 CDD:238125
ANK repeat 114..145 CDD:293786
ANK 142..297 CDD:238125
ANK repeat 147..178 CDD:293786
ANK repeat 180..210 CDD:293786
ANK repeat 243..274 CDD:293786
ANK repeat 276..307 CDD:293786
MYSc 425..1161 CDD:214580 208/748 (28%)
MYSc_Myo16 437..1154 CDD:276844 203/730 (28%)
NYAP_N 1246..1603 CDD:292079 40/217 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG4229
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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