DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ck and nmy-2

DIOPT Version :9

Sequence 1:NP_001285949.1 Gene:ck / 34882 FlyBaseID:FBgn0000317 Length:2167 Species:Drosophila melanogaster
Sequence 2:NP_492186.3 Gene:nmy-2 / 172562 WormBaseID:WBGene00003777 Length:2003 Species:Caenorhabditis elegans


Alignment Length:2000 Identity:507/2000 - (25%)
Similarity:863/2000 - (43%) Gaps:428/2000 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 EPASGREFDVAIGARVVSAEGRRIQVRDDDGDEVWLAPERRIKAMHASSVQGVEDMISLGDLHEA 77
            ||.:....|:.:     ...|.|.:|..||..:.  .|.:..|.         |||..|..|:||
 Worm    52 EPHADGTIDIEL-----METGERQRVSSDDCQKP--NPPKYDKC---------EDMSMLTCLNEA 100

  Fly    78 GILRNLLIRYKENLIYTYTGSILVAVNPYQILPIYTGDQIKLYKERKIGELPPHIFAIGDNAYAH 142
            .:|.||..||..||.|||:|...|.:|||:.:||||....:.:|.:|..|:||||||:.|.||..
 Worm   101 SVLHNLKQRYFSNLYYTYSGLFCVVINPYKRIPIYTDTIAEQFKCKKRKEMPPHIFAVADEAYRS 165

  Fly   143 MKRYRQDQCIVISGESGAGKTESTKLILQYLAAISGKH-------------------SWIEQQIL 188
            |.:.|.||.|:.:|||||||||:||.::||||.::.:.                   ..:|:|:|
 Worm   166 MLQERDDQSILCTGESGAGKTENTKKVIQYLAYVANRSMVKNRKTSVDLDTSTNRIMGQLEEQLL 230

  Fly   189 EANPILEAFGNAKTIRNDNSSRFGKYIDIHFSANGVIEGAKIEQYLLEKSRIVSQNHSERNYHVF 253
            :||||||||||:||::|||||||||:|.:||.:.|.|.||.||.|||||||::.|..:||::|:|
 Worm   231 QANPILEAFGNSKTVKNDNSSRFGKFIRVHFDSTGCISGANIEFYLLEKSRVLKQAPNERSFHIF 295

  Fly   254 YCILAGLSADEKSRLDL-GMAADYKYLTGGNSITCEGRDDAAEFSDIRSAMKVLLFSDQEIWEII 317
            |.:|.|||..::....| ...:.||:::.|:| ...|.||.||..:..:||.::..:|:||..|:
 Worm   296 YQLLKGLSKVQREHYLLEDSLSKYKFVSNGDS-KLAGVDDGAEMKETLNAMSIMGLNDEEIGGIL 359

  Fly   318 KLLAALLHCGNIKYKATVVDNLDATEIPEHINVERVAGLLGLPIQPLIDALTRRTLFAHGETVVS 382
            ::::|::..||:::.....:|..|..:.:.: .:::|.|||:.:..|:.|..:..:....:.|  
 Worm   360 RVVSAVMLFGNLEFSHENKNNDQAVLLNDAV-AQKIASLLGVNVTELMRAFLKPKIKVQRDLV-- 421

  Fly   383 TLSRDQSVDVRD----AFVKGIYGRMFVHIVRKINTAIFKPRGTSRNAIGVLDIFGFENFDQNSF 443
              .|.||||..:    |..|..|.|:|..:|.::|.::.:.|..|.:.||:|||.|||.|:.|||
 Worm   422 --HRAQSVDQVNFSVGAIAKASYERLFRWLVHRLNKSLDRTRQQSVSFIGILDIAGFEIFETNSF 484

  Fly   444 EQFCINYANENLQQFFVQHIFKLEQEEYNHEAINWQHIEF-VDNQDALDLIAIKQLNIMALIDEE 507
            ||.||||.||.|||.|...:|..||:||..|.:.|:.::| ::.|..:|||. |.:.||:.:|:.
 Worm   485 EQLCINYTNEKLQQLFNNTMFVREQQEYLDEGLEWKFLDFGLNLQPTIDLID-KPMGIMSTLDDV 548

  Fly   508 ARFPKGTDQTMLAKLHKTHGSHKNYLKPKSDINTSFGLNHFAGVVFYDTRGFLDKNRDTFSPDLL 572
            ..||:|.||:.:.:|:.||..|..|:.|:....:.|.:.|:||.|.|.:.|:..||.|..:.:::
 Worm   549 CLFPQGNDQSFVQRLNNTHSQHPKYVVPEIRSRSDFAVVHYAGRVDYQSEGWRVKNMDPLNENVI 613

  Fly   573 HLVSQSTNKFLRQIFAQDI---------EMGAET---RKRTP------TLSTQFRKSLDALMKTL 619
            .::..|....:..:: :||         :..::|   ..|.|      |:|..:::.|..||.||
 Worm   614 DVLKTSKESLIVDMW-KDIADVCSLSAADSTSDTGVFGSRVPKKGMFRTVSQLYKEQLARLMSTL 677

  Fly   620 SSCQPFFIRCIKPNELKKPMMFDRGLCCRQLRYSGMMETIRIRRAGYPIRHGFREFVERY-RFLI 683
            ::..|.|:|||.||..||..:.:..|...|||.:|::|.|||.|.|:|.|..|:||.:|| :.|.
 Worm   678 NNTNPHFVRCIIPNHEKKHGVLNAHLVLDQLRCNGVLEGIRICRQGFPTRLPFQEFRQRYEKLLA 742

  Fly   684 PGVPPAHRTDCQAATSRICAVV-LGKSDYQLGHTKVFLKDAHDLFLEQERDRVLTRKILILQRSI 747
            |.|.||...|.:.|..||...: :..:.:::|.:|:|.:.......|:.||:.|:..|...|...
 Worm   743 PDVNPAGFMDGKNAVYRIVQYLEVDANLFRIGQSKIFFRSGVIAEFEEMRDQKLSALIESFQAQC 807

  Fly   748 RGWVYRRRFLRLRAAAITVQ------------RFWKGYAQRKRYRNMRVGYMRLQALIRSRVLSH 800
            |||:.||..:|.|...:.::            |.|:.:....:.:.:      |:...:..:::.
 Worm   808 RGWLGRRVMVRRREQEVAIKILQRNGLAWMRLREWQWWRLLTKVKPL------LEVTNKDELIAE 866

  Fly   801 RFRHLRGHIVGLQAHARGYLVRREYGHKMWAVIKIQSHVRRMIAMRRYRKLRL--EHKQFAEVLQ 863
            |.:.|:   |..:...|..:...:|..:|          .:|...|...|.||  |..:.||:.:
 Worm   867 REQELK---VTAEKLRRSEVFISDYKQQM----------EKMDEERLVLKTRLDAESSERAEIFE 918

  Fly   864 LR-------------------KLE-EQELLHRGNKHAREIAE--QHYRDRLHELERREIQEQLEN 906
            .|                   :|| |::...:.:..:|::.|  :|..:.|.:.||        :
 Worm   919 ERSRMAARRDELEGILEEVSKRLEIEEQKAKKADSESRKLTEMVRHLEENLEDEER--------S 975

  Fly   907 RRRVEVNMNIINDAARKQE----EPVDDG----KLVEAMFDFLPDSSSDAPTPHGGRETSVFNDL 963
            |:::.:..|.|....::.|    |..|.|    |..:|:.:...|.||           .:.:::
 Worm   976 RQKLLLEKNSIESRLKELEAQGLELEDSGNKLSKEKKALEERCEDLSS-----------RLIDEV 1029

  Fly   964 PHAQNVNQDDIIAPIHISEDEEDLSEFKFQKFAATYFQGNVNHQYAKKALKHPLLPLHTQGDQLA 1028
            ..::.:.:........::|..::|.:.|.|:.         |.:.|::|.:              
 Worm  1030 ERSKQLVKAKARLEATVAEINDELEKEKQQRH---------NAETARRAAE-------------- 1071

  Fly  1029 AQALWITILRFTGDMPEPKYHTMDRMDTTSVMSKVTATLGRNFIRSKEFQEAQLMGLDPDAFLKQ 1093
                  |.||...:....|  |....:.|:.:.:..:.|.:..||:.|...|:..       |::
 Worm  1072 ------TQLREEQESCLEK--TRKAEELTNQLMRKESELSQISIRNDEELAARQQ-------LER 1121

  Fly  1094 KPRSIRHKL---VSLTLKRK--NKLGEDVRRRLQDDEYTADSYQSWLQSRPTSNLEKLHFIIGHG 1153
            :.|.||.:|   :..|.|.|  .:..|..||.:      |:..:|:.|....|| :|   .:.|.
 Worm  1122 EIREIRAQLDDAIEETNKEKAARQKAEKARRDM------AEELESYKQELEESN-DK---TVLHS 1176

  Fly  1154 ILRAELRDEIYCQICKQLTNNPLKSSHARGWILLSLCVGCFAPSEKFVNYLRAFIREGPPGYAPY 1218
            .|:|: |||.|..:.||| ...:|||.       .:.....|.::|.:..|...|          
 Worm  1177 QLKAK-RDEEYAHLQKQL-EETVKSSE-------EVVEEMKAQNQKKIEELNETI---------- 1222

  Fly  1219 CEERLKRTFNNGTRNQPPSWLELQATKSKKPIMLPITFMDGNTKTLLADSATTARELCNQLSDKI 1283
              ::|||.             ::.|.|:|              .:..:|:.....||.|..|.::
 Worm  1223 --DQLKRQ-------------KISADKAK--------------SSAESDNENFRAELSNIASARL 1258

  Fly  1284 SL--KDQFGFSLYIALFDKVSSLGSGGDHVMDAIS----QCEQYAKEQGAQE--------RNAPW 1334
            ..  |.:...:..:....|:..:.|..|.:|..:|    :.|...|.:.|.|        :||..
 Worm  1259 EAEKKRKAAETSLMEKDHKMREMQSNLDDLMAKLSKMNNELESIQKAKSADETLNSNLLKKNASL 1323

  Fly  1335 RLFFRKEIFAPWHEPTHDQVATNLIYQQVVRGVKFGEYRCDKEEDLAMIAAQQYFIEYSTDM--S 1397
            .:.. .|:.....|....:...|...:|:             |||||:.      :|...|.  :
 Worm  1324 DMQL-SELTEASEEDRRTRATLNNKIRQL-------------EEDLAVA------VEARDDALDA 1368

  Fly  1398 MERLFTLLPNFIPDFCLSGVDKAIERWAALVLQAYKK----SYYVKDKIAPLKIKEDIVSYAKYK 1458
            .|:                ::|.::...:|:.:|.||    :..|.:::...|.||  :|..|.:
 Worm  1369 QEK----------------IEKEVKEVKSLLAEARKKLDEENREVMEELRKKKEKE--LSAEKER 1415

  Fly  1459 WPLLFSRFYEAYRNSGPNLPKNDVIIAVNWTGVYVVDDQEQVLLELSFPEITAVSSQKTNKVFTQ 1523
                 :...|..|:......|.            .:.:.|.|..||:  ::.|.:.:...|:...
 Worm  1416 -----ADMAEQARDKAERAKKK------------AIQEAEDVQKELT--DVVAATREMERKMRKF 1461

  Fly  1524 TFSLSTVRGEEFTFQSPNAEDIRDLVVYFLDGLKKRSKYVIALQDYRAPSDGTSFLSFFKGDLII 1588
            ...|:..|.....     |:..||:....|...:  :|.::...:.....|....|...|..| .
 Worm  1462 DQQLAEERNNTLL-----AQQERDMAHQMLRDAE--TKALVLSNELSEKKDIVDQLEKDKRTL-K 1518

  Fly  1589 LEDESCGESVLNNGWCIGRCDRSQERGDFPAETVYVLPTLSKPPQDILALFNIEEAHHGRRLSMA 1653
            ||.::...:..:.|..:...::::.|.|         ..||:..|.|:.|   |:|     |.:|
 Worm  1519 LEIDNLASTKDDAGKNVYELEKTKRRLD---------EELSRAEQQIIEL---EDA-----LQLA 1566

  Fly  1654 SNGGAVEPRDRPHTLMEYALDHFRLPPKRTMSKTLTLSSKRSEELWRYSRDPIKAPLLRKLQS-K 1717
            .     :.|.|....|:.....|.          ..|:|:..:|      |..|..|..|::: .
 Worm  1567 D-----DARSRVEVNMQAMRSEFE----------RQLASREEDE------DDRKKGLTSKIRNLT 1610

  Fly  1718 EEFAEEACFAFAAILKYMGDLPSKRPRMGNEITDHIFDGPLKHEILRDEIYCQLMKQLTD-NRNR 1781
            ||...|.....|||..     ..|.....:|:|:       |:|        ..::|:.| :|..
 Worm  1611 EELESEQRARQAAIAN-----KKKIESQISELTE-------KNE--------ASLRQIEDLSRQL 1655

  Fly  1782 MSEERGWELMWLATGLFACSQGLLKELLLFLR--TRRHPISQDSMHRLQ---KTIRHGQRKYPPH 1841
            ...:.||:.:.|..   ..::..:::.|...|  .:|...|:|.:.||.   :.:...:||    
 Worm  1656 RKAQLGWKDLQLDV---TEARAAMEDALAGQRDAEKRARASEDEIKRLTADIQAVSSSKRK---- 1713

  Fly  1842 QVEVEAIQHKTTQIFHKVYFPDDTDEAFEVDSSTRAKDFCNNISQRLSLR 1891
               .||                :.||..|..||.||..|.|...:||..:
 Worm  1714 ---AEA----------------ERDELIEEVSSLRASSFSNEEKRRLEAK 1744

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ckNP_001285949.1 MYSc 64..733 CDD:214580 264/713 (37%)
MYSc_Myo7 77..721 CDD:276832 257/688 (37%)
MyTH4 <1138..1245 CDD:214535 24/106 (23%)
B41 1251..1467 CDD:214604 40/235 (17%)
FERM_B-lobe 1355..1439 CDD:271216 15/89 (17%)
FERM_C1_MyoVII 1461..1559 CDD:270019 15/97 (15%)
SH3 1560..1624 CDD:302595 10/63 (16%)
MyTH4 1701..1849 CDD:214535 32/154 (21%)
B41 1856..2068 CDD:214604 11/35 (31%)
FERM_M 1966..2068 CDD:278785
FERM_C2_MyoVII 2064..2159 CDD:270020
nmy-2NP_492186.3 MYSc 81..793 CDD:214580 266/728 (37%)
MYSc_class_II 100..781 CDD:276951 257/688 (37%)
Myosin_tail_1 858..1934 CDD:279860 218/1163 (19%)
ATP-synt_B <1104..1195 CDD:304375 31/109 (28%)
CDC37_N <1317..1396 CDD:296150 19/114 (17%)
Orbi_VP5 1599..>1865 CDD:279272 42/191 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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