DRSC/TRiP Functional Genomics Resources

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Protein Alignment Su(H) and rbpjl

DIOPT Version :9

Sequence 1:NP_001285948.1 Gene:Su(H) / 34881 FlyBaseID:FBgn0004837 Length:594 Species:Drosophila melanogaster
Sequence 2:XP_021333036.1 Gene:rbpjl / 503870 ZFINID:ZDB-GENE-050307-4 Length:483 Species:Danio rerio


Alignment Length:463 Identity:248/463 - (53%)
Similarity:331/463 - (71%) Gaps:32/463 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    66 VHHQQQQQQQQQQQQQQHQQQMQMSLLPGPYRPHIEEKKLTRDAMEKYMRERNDMVIVILHAKVA 130
            |||::.|...              |||           |:|||::.:|::.|.|..:.|||||||
Zfish     7 VHHREDQSFS--------------SLL-----------KVTRDSVRQYLQFRPDQSVTILHAKVA 46

  Fly   131 QKSYGNEKRFFCPPPCIYLFGSGWRRRYEEMLQQGEGEQGAQLCAFIGIGSSDQ---DMQQLDL- 191
            ||||||||||||||||:||.|.||:.|.|:....|..|...::..::|:.||:.   |..:|.. 
Zfish    47 QKSYGNEKRFFCPPPCVYLSGHGWKVRQEQFKASGLNESACRIFGYMGLDSSNDPRTDSFKLSFE 111

  Fly   192 ---NGKQYCAAKTLFISDSDKRKHFMLSVKMFYGNGHDIGVFNSKRIKVISKPSKKKQSLKNADL 253
               :.|.:..||||:|||:||||||.|.:.:|:..|.:||.|||:.||||||||:|:||:|||||
Zfish   112 EQTDKKMFACAKTLYISDTDKRKHFRLLLHLFHNGGQEIGTFNSRLIKVISKPSQKRQSMKNADL 176

  Fly   254 CIASGTNVALFNRLRSQTVSTRYLHVENGHFHASSTQWGAFTIHLLDDNESESEEFQVRDGYIHY 318
            ||:||:.|:|||||||||||||||.||:|.|.||:.||.|||::|:::.::...|:.:.:.||.|
Zfish   177 CISSGSKVSLFNRLRSQTVSTRYLAVEDGAFVASARQWTAFTVNLVEETQAVHSEYTMCESYICY 241

  Fly   319 GATVKLVCSVTGMALPRLIIRKVDKQMALLEADDPVSQLHKCAFYMKDTDRMYLCLSQEKIIQFQ 383
            |..|:|||:.:|:|||.::||||:||.|.|:.|:||||||||||..:.:|.||||||.|||||||
Zfish   242 GCVVQLVCTDSGVALPPMVIRKVNKQQACLDVDEPVSQLHKCAFQFRGSDHMYLCLSNEKIIQFQ 306

  Fly   384 ATPCPKEPNKEMINDGACWTIISTDKAEYQFYEGMGPVASPVTPVPIVNSLNLNGGGDVAMLELS 448
            |:|||||.||..:|||:|||||.|:..||.|.|.:....:.::|||:::.|.|||||.||||||.
Zfish   307 ASPCPKESNKVSLNDGSCWTIIGTEVVEYSFSESLTGHPATISPVPVISGLELNGGGHVAMLELH 371

  Fly   449 GDNFTPHLQVWFGDVEAETMYRCTETLLCVVPEISQFRGEWLWVRQPTQVPISLVRNDGIIYATG 513
            |:||:|||:||||::|||||:|.:.:||||||::|...|||.|.|||..||:||:|.||:||.:.
Zfish   372 GENFSPHLRVWFGNMEAETMFRSSRSLLCVVPDVSILSGEWRWTRQPITVPLSLIRLDGLIYRSW 436

  Fly   514 LTFTYTPE 521
            .:||||||
Zfish   437 FSFTYTPE 444

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Su(H)NP_001285948.1 LAG1-DNAbind 122..251 CDD:286370 71/135 (53%)
BTD 253..402 CDD:286369 90/148 (61%)
IPT_RBP-Jkappa 424..520 CDD:238581 57/95 (60%)
rbpjlXP_021333036.1 LAG1-DNAbind 38..174 CDD:312691 71/135 (53%)
BTD 176..325 CDD:312690 90/148 (61%)
IPT 348..443 CDD:326624 57/94 (61%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170585296
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3743
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D323392at33208
OrthoFinder 1 1.000 - - FOG0002244
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10665
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1483
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
87.850

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