DRSC/TRiP Functional Genomics Resources

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Protein Alignment Su(H) and Rbpjl2

DIOPT Version :9

Sequence 1:NP_001285948.1 Gene:Su(H) / 34881 FlyBaseID:FBgn0004837 Length:594 Species:Drosophila melanogaster
Sequence 2:XP_006237799.1 Gene:Rbpjl2 / 297767 RGDID:1310557 Length:501 Species:Rattus norvegicus


Alignment Length:464 Identity:345/464 - (74%)
Similarity:390/464 - (84%) Gaps:11/464 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly   103 KKLTRDAMEKYMRERNDMVIVILHAKVAQKSYGNEKR-FFCPPPCIYLFGSGWRRRYEEMLQQGE 166
            |:|||:||..|::||.|..::|||||||||||||||| |||||||:||.||||:::..:|.:.|.
  Rat    29 KQLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFFCPPPCVYLMGSGWKKKKXQMERDGC 93

  Fly   167 GEQGAQLCAFIGIGSSDQDMQQLDLNGKQYCAAKTLFISDSDKRKHFMLSVKMFYGNGHDIGVFN 231
            .||.:|.|||||||:|||:||||:|.||.||.||||:|.||||||||||||||.|.|..|||||.
  Rat    94 SEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYIPDSDKRKHFMLSVKMVYVNSDDIGVFL 158

  Fly   232 SKRIKVISKPSKKKQSLKNADLCIASGTNVALFNRLRSQTVSTRYLHVENGHFHASSTQWGAFTI 296
            |||.|||||||||||||||:||||||||.|||||||||||||||||.||.|:.||||.|||||.|
  Rat   159 SKRKKVISKPSKKKQSLKNSDLCIASGTKVALFNRLRSQTVSTRYLXVEGGNLHASSQQWGAFYI 223

  Fly   297 HLLDDNESESEEFQVRDGYIHYGATVKLVCSVTGMALPRLIIRKVDKQMALLEADDPVSQLHKCA 361
            |||||:|||.|||.||||||.||.|||||||||||||||||||||.||.|||:||||||||||||
  Rat   224 HLLDDDESEGEEFTVRDGYIRYGQTVKLVCSVTGMALPRLIIRKVHKQTALLDADDPVSQLHKCA 288

  Fly   362 FYMKDTDRMYLCLSQEKIIQFQATPCPKEPNKEMINDGACWTIISTDKAEYQFYEGMGPVASPVT 426
            ||:|||:|||||||||:||||||||||||.|||||||||.|||||||||||.|:||:|||.:|||
  Rat   289 FYLKDTERMYLCLSQERIIQFQATPCPKEQNKEMINDGASWTIISTDKAEYTFHEGVGPVLAPVT 353

  Fly   427 PVPIVNSLNLNGGGDVAMLELSGDNFTPHLQVWFGDVEAETMYRCTETLLCVVPEISQFRGEWLW 491
            |||:|.||.||||||||||||:|.||||:|:||||||||:|||||.|::|||||:||.||..|.|
  Rat   354 PVPVVESLQLNGGGDVAMLELTGQNFTPNLRVWFGDVEAKTMYRCGESMLCVVPDISAFREGWRW 418

  Fly   492 VRQPTQVPISLVRNDGIIYATGLTFTYTPEPGPRPHCNTQAEDVMRARQN---------NNNNNI 547
            ||||.|:.::|||||||||:|.|||||||||||||||.. |..::||..:         |:..|.
  Rat   419 VRQPVQISVTLVRNDGIIYSTSLTFTYTPEPGPRPHCGA-AGAILRANSSQVPTNESNTNSKGNY 482

  Fly   548 TSISNNNNS 556
            |:.|.|:.|
  Rat   483 TNASTNSTS 491

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Su(H)NP_001285948.1 LAG1-DNAbind 122..251 CDD:286370 96/129 (74%)
BTD 253..402 CDD:286369 129/148 (87%)
IPT_RBP-Jkappa 424..520 CDD:238581 72/95 (76%)
Rbpjl2XP_006237799.1 LAG1-DNAbind 48..178 CDD:286370 96/129 (74%)
BTD 180..329 CDD:286369 129/148 (87%)
IPT_RBP-Jkappa 351..447 CDD:238581 72/95 (76%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 279 1.000 Domainoid score I1623
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 736 1.000 Inparanoid score I569
OMA 1 1.010 - - QHG48640
OrthoDB 1 1.010 - - D323392at33208
OrthoFinder 1 1.000 - - FOG0002244
OrthoInspector 1 1.000 - - otm46177
orthoMCL 1 0.900 - - OOG6_104439
Panther 1 1.100 - - O PTHR10665
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1483
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1110.980

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