DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Su(H) and rbpj

DIOPT Version :9

Sequence 1:NP_001285948.1 Gene:Su(H) / 34881 FlyBaseID:FBgn0004837 Length:594 Species:Drosophila melanogaster
Sequence 2:XP_017945079.2 Gene:rbpj / 100491789 XenbaseID:XB-GENE-490756 Length:487 Species:Xenopus tropicalis


Alignment Length:471 Identity:363/471 - (77%)
Similarity:407/471 - (86%) Gaps:7/471 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    91 LLPGPYRPHIEEKKLTRDAMEKYMRERNDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLFGSGWR 155
            ::.|.:....:.|:|||:||..|::||.|..::|||||||||||||||||||||||:||.||||:
 Frog     4 VVTGKFGERPQPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWK 68

  Fly   156 RRYEEMLQQGEGEQGAQLCAFIGIGSSDQDMQQLDLNGKQYCAAKTLFISDSDKRKHFMLSVKMF 220
            ::.|:|.:.|..||.:|.|||||||:|||:||||:|.||.||.||||:|||||||||||||||||
 Frog    69 KKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFMLSVKMF 133

  Fly   221 YGNGHDIGVFNSKRIKVISKPSKKKQSLKNADLCIASGTNVALFNRLRSQTVSTRYLHVENGHFH 285
            |||..|||||.||||||||||||||||||||||||||||.||||||||||||||||||||.|:||
 Frog   134 YGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYLHVEGGNFH 198

  Fly   286 ASSTQWGAFTIHLLDDNESESEEFQVRDGYIHYGATVKLVCSVTGMALPRLIIRKVDKQMALLEA 350
            |||.|||||.||||||.|||.|||.|||||||||.||||||||||||||||||||||||.|||:|
 Frog   199 ASSQQWGAFYIHLLDDEESEGEEFTVRDGYIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALLDA 263

  Fly   351 DDPVSQLHKCAFYMKDTDRMYLCLSQEKIIQFQATPCPKEPNKEMINDGACWTIISTDKAEYQFY 415
            |||||||||||||:|||:|||||||||:||||||||||||||||||||||.|||||||||||.||
 Frog   264 DDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEPNKEMINDGASWTIISTDKAEYTFY 328

  Fly   416 EGMGPVASPVTPVPIVNSLNLNGGGDVAMLELSGDNFTPHLQVWFGDVEAETMYRCTETLLCVVP 480
            ||||||.:||||||:|.||.||||||||||||:|.||||:|:||||||||||||||.|::|||||
 Frog   329 EGMGPVNAPVTPVPVVESLQLNGGGDVAMLELTGQNFTPNLRVWFGDVEAETMYRCAESMLCVVP 393

  Fly   481 EISQFRGEWLWVRQPTQVPISLVRNDGIIYATGLTFTYTPEPGPRPHCNTQAEDVMRARQNNNNN 545
            :||.||..|.|||||.|||::|||||||||:|.|||||||||||||||:. |..::||      |
 Frog   394 DISAFREGWRWVRQPVQVPVTLVRNDGIIYSTSLTFTYTPEPGPRPHCSA-AGAILRA------N 451

  Fly   546 NITSISNNNNSNNAGS 561
            :....||.:|:|:.||
 Frog   452 SSLLASNESNTNSEGS 467

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Su(H)NP_001285948.1 LAG1-DNAbind 122..251 CDD:286370 101/128 (79%)
BTD 253..402 CDD:286369 134/148 (91%)
IPT_RBP-Jkappa 424..520 CDD:238581 75/95 (79%)
rbpjXP_017945079.2 LAG1-DNAbind 35..160 CDD:401274 97/124 (78%)
BTD 193..315 CDD:401273 108/121 (89%)
IPT_RBP-Jkappa 337..433 CDD:238581 75/95 (79%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 281 1.000 Domainoid score I1646
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H7511
Inparanoid 1 1.050 750 1.000 Inparanoid score I569
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D323392at33208
OrthoFinder 1 1.000 - - FOG0002244
OrthoInspector 1 1.000 - - oto105054
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1483
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
77.060

Return to query results.
Submit another query.