DRSC/TRiP Functional Genomics Resources

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Protein Alignment yellow-c and smp-30

DIOPT Version :9

Sequence 1:NP_001285947.1 Gene:yellow-c / 34879 FlyBaseID:FBgn0041713 Length:438 Species:Drosophila melanogaster
Sequence 2:NP_001262580.1 Gene:smp-30 / 41786 FlyBaseID:FBgn0038257 Length:306 Species:Drosophila melanogaster


Alignment Length:243 Identity:52/243 - (21%)
Similarity:84/243 - (34%) Gaps:96/243 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   216 DADRSECQDAFAYIPDLGAYGVIVYSLRNDKSYRVK---HNFFHFD-PLHG---DFNVG----GV 269
            |.||..     .|..||.:.|:..|..:.:|.||.|   ..|..|. |:..   :|.||    .|
  Fly    25 DVDRQS-----LYYVDLESAGINRYDFKQNKVYRAKIEGEIFASFILPVENKPQEFAVGCGLRTV 84

  Fly   270 NFQWTDGVFGLA-----VGPMNPDHSKDIYFHALASTKEFKVSNRVLQNESHVTAGDSYYDFKYV 329
            ..|| |||..:|     :..:.||            .||    ||:  |::.......:|     
  Fly    85 IVQW-DGVSAVAKVTRTLFEVQPD------------LKE----NRL--NDAKTDPNGRFY----- 125

  Fly   330 GDRGMNGQSTAEVFDPETGVIFYTQV--------NKDAIA---CWNI--KRPYTPDTQGLIDSDS 381
               |.....:.::|....|.::..|.        :|..|:   .|::  |:.|      .||:::
  Fly   126 ---GGTMADSGDIFTQWKGELYSWQAGGQPNAIRSKVGISNGLAWDVKAKKFY------FIDTNN 181

  Fly   382 HTL-----------------------------VFPNDMKIDNEGTIWV 400
            |.:                             :||:.|.:|.:|.|:|
  Fly   182 HEVLAYDYNQSTGAVSNPKVIFDLRKIRPEGPLFPDGMTVDTDGNIYV 229

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
yellow-cNP_001285947.1 MRJP 148..436 CDD:281074 52/243 (21%)
smp-30NP_001262580.1 SGL 18..277 CDD:285626 52/243 (21%)
NHL 168..>248 CDD:302697 12/68 (18%)
NHL repeat 168..208 CDD:271320 5/45 (11%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG3386
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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