DRSC/TRiP Functional Genomics Resources

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Protein Alignment GABA-B-R1 and Gabbr1

DIOPT Version :9

Sequence 1:NP_001246033.1 Gene:GABA-B-R1 / 34878 FlyBaseID:FBgn0260446 Length:841 Species:Drosophila melanogaster
Sequence 2:XP_006255941.1 Gene:Gabbr1 / 81657 RGDID:621537 Length:991 Species:Rattus norvegicus


Alignment Length:812 Identity:388/812 - (47%)
Similarity:538/812 - (66%) Gaps:58/812 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 PHLQGGVAGRPDE----LHIGGIFPIAGKGGWQGGQACMPAARLALDDVNKQPNLLPGFKLILHS 80
            ||.|  |...|..    ::||.:||::  |||.|||||.||..:||:|||.:.::||.::|.|..
  Rat   154 PHCQ--VNRTPHSERRAVYIGALFPMS--GGWPGGQACQPAVEMALEDVNSRRDILPDYELKLIH 214

  Fly    81 NDSECEPGLGASVMYNLLYNKPQKLMLLAGCSTVCTTVAEAAKMWNLIVLCYGASSPALSDRKRF 145
            :||:|:||.....:|.||||.|.|::|:.|||:|.|.|||||:|||||||.||:||||||:|:||
  Rat   215 HDSKCDPGQATKYLYELLYNDPIKIILMPGCSSVSTLVAEAARMWNLIVLSYGSSSPALSNRQRF 279

  Fly   146 PTLFRTHPSATVHNPTRIKLMKKFGWSRVAILQQAEEVFISTVEDLENRCMEAGVEIVTRQSFLS 210
            ||.||||||||:|||||:||.:|:||.::|.:||..|||.||::|||.|..|||:||..||||.|
  Rat   280 PTFFRTHPSATLHNPTRVKLFEKWGWKKIATIQQTTEVFTSTLDDLEERVKEAGIEITFRQSFFS 344

  Fly   211 DPTDAVRNLRRQDARIIVGLFYVVAARRVLCEMYKQQLYGRAHVWFFIGWYEDNWYEVNLKAEGI 275
            ||...|:||:||||||||||||...||:|.||:||::|:|:.:|||.||||.|||::.  ....|
  Rat   345 DPAVPVKNLKRQDARIIVGLFYETEARKVFCEVYKERLFGKKYVWFLIGWYADNWFKT--YDPSI 407

  Fly   276 TCTVEQMRIAAEGHLTTEALMWNQNNQTTISGMTAEEFRHRLNQALIEEGYDINHDRYPE---GY 337
            .||||:|..|.|||:|||.:|.|..|..:||.||::||..:|.:.|         .|:||   |:
  Rat   408 NCTVEEMTEAVEGHITTEIVMLNPANTRSISNMTSQEFVEKLTKRL---------KRHPEETGGF 463

  Fly   338 QEAPLAYDAVWSVALAFNKTMERLTTGKKSLRDFTYTDKEIADEIYAAMNSTQFLGVSGVVAFSS 402
            |||||||||:|::|||.|||..........|.||.|.::.|.|:||.||||:.|.||||.|.|.:
  Rat   464 QEAPLAYDAIWALALALNKTSGGGGRSGVRLEDFNYNNQTITDQIYRAMNSSSFEGVSGHVVFDA 528

  Fly   403 QGDRIALTQIEQMIDGKYEKLGYYDTQLDNLSWLNTEQWIGGKVPQDRTIVTHVLRTVSLPLFVC 467
            .|.|:|.|.|||:..|.|:|:||||:..|:|||..|::||||..|.|:|:|....|.:|..||:.
  Rat   529 SGSRMAWTLIEQLQGGSYKKIGYYDSTKDDLSWSKTDKWIGGSPPADQTLVIKTFRFLSQKLFIS 593

  Fly   468 MCTISSCGIFVAFALIIFNIWNKHRRVIQSSHPVCNTIMLFGVIICLISVILLGIDGRFVSPEEY 532
            :..:||.||.:|...:.|||:|.|.|.||:|.|..|.:...|..:.|.:|..||:||..:...::
  Rat   594 VSVLSSLGIVLAVVCLSFNIYNSHVRYIQNSQPNLNNLTAVGCSLALAAVFPLGLDGYHIGRSQF 658

  Fly   533 PKICQARAWLLSTGFTLAYGAMFSKVWRVHRFTTK--AKTDPKKKVEPWKLYTMVSGLLSIDLVI 595
            |.:||||.|||..||:|.||:||:|:|.||...||  .|.:.:|.:||||||..|..|:.:|::.
  Rat   659 PFVCQARLWLLGLGFSLGYGSMFTKIWWVHTVFTKKEEKKEWRKTLEPWKLYATVGLLVGMDVLT 723

  Fly   596 LLSWQIFDPLQRYLETFPLEDPVSTTDDIKIRPELEHCESQRNSMWLG----------------- 643
            |..|||.|||.|.:|||..|:|.... |:.|.|:||||.|::.:.|||                 
  Rat   724 LAIWQIVDPLHRTIETFAKEEPKEDI-DVSILPQLEHCSSKKMNTWLGELWSFAVSSDVQRRATV 787

  Fly   644 --------------LVYGFKGLILVFGLFLAYETRSIKVKQINDSRYVGMSIYNVVVLCLITAPV 694
                          :.||:|||:|:.|:||||||:|:..::|||.|.|||:||||.|||||||||
  Rat   788 GGDSPICVWPAPESIFYGYKGLLLLLGIFLAYETKSVSTEKINDHRAVGMAIYNVAVLCLITAPV 852

  Fly   695 GMVIASQQDASFAFVALAVIFCCFLSMLLIFVPKVIEVIRHPKDKAESK--YNPDSAISKEDEER 757
            .|:::|||||:|||.:||::|..:::::::||||:..:|...:.::|::  ....|:.:..:||:
  Rat   853 TMILSSQQDAAFAFASLAIVFSSYITLVVLFVPKMRRLITRGEWQSETQDTMKTGSSTNNNEEEK 917

  Fly   758 YQKLVTENEELQRLITQKEEKIRVLRQRLVER 789
            .:.|..||.||:::|.:|||::..||.:|..|
  Rat   918 SRLLEKENRELEKIIAEKEERVSELRHQLQSR 949

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GABA-B-R1NP_001246033.1 PBP1_GABAb_receptor 34..437 CDD:107361 223/405 (55%)
ANF_receptor 52..415 CDD:279440 201/365 (55%)
7tm_3 476..730 CDD:278433 126/286 (44%)
Gabbr1XP_006255941.1 Sushi 106..156 CDD:278512 1/1 (100%)
PBP1_GABAb_receptor 170..562 CDD:107361 222/404 (55%)
ANF_receptor 186..542 CDD:279440 202/366 (55%)
7tm_3 602..887 CDD:278433 125/285 (44%)
Ax_dynein_light <915..957 CDD:287215 15/35 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166354012
Domainoid 1 1.000 407 1.000 Domainoid score I683
eggNOG 1 0.900 - - E1_KOG1055
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H1132
Inparanoid 1 1.050 763 1.000 Inparanoid score I520
OMA 1 1.010 - - QHG49267
OrthoDB 1 1.010 - - D267884at33208
OrthoFinder 1 1.000 - - FOG0006100
OrthoInspector 1 1.000 - - oto96530
orthoMCL 1 0.900 - - OOG6_105862
Panther 1 1.100 - - LDO PTHR10519
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X4397
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1413.810

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