DRSC/TRiP Functional Genomics Resources

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Protein Alignment GABA-B-R1 and Gabbr1

DIOPT Version :10

Sequence 1:NP_523569.3 Gene:GABA-B-R1 / 34878 FlyBaseID:FBgn0260446 Length:841 Species:Drosophila melanogaster
Sequence 2:XP_006255941.1 Gene:Gabbr1 / 81657 RGDID:621537 Length:991 Species:Rattus norvegicus


Alignment Length:812 Identity:388/812 - (47%)
Similarity:538/812 - (66%) Gaps:58/812 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 PHLQGGVAGRPDE----LHIGGIFPIAGKGGWQGGQACMPAARLALDDVNKQPNLLPGFKLILHS 80
            ||.|  |...|..    ::||.:||::  |||.|||||.||..:||:|||.:.::||.::|.|..
  Rat   154 PHCQ--VNRTPHSERRAVYIGALFPMS--GGWPGGQACQPAVEMALEDVNSRRDILPDYELKLIH 214

  Fly    81 NDSECEPGLGASVMYNLLYNKPQKLMLLAGCSTVCTTVAEAAKMWNLIVLCYGASSPALSDRKRF 145
            :||:|:||.....:|.||||.|.|::|:.|||:|.|.|||||:|||||||.||:||||||:|:||
  Rat   215 HDSKCDPGQATKYLYELLYNDPIKIILMPGCSSVSTLVAEAARMWNLIVLSYGSSSPALSNRQRF 279

  Fly   146 PTLFRTHPSATVHNPTRIKLMKKFGWSRVAILQQAEEVFISTVEDLENRCMEAGVEIVTRQSFLS 210
            ||.||||||||:|||||:||.:|:||.::|.:||..|||.||::|||.|..|||:||..||||.|
  Rat   280 PTFFRTHPSATLHNPTRVKLFEKWGWKKIATIQQTTEVFTSTLDDLEERVKEAGIEITFRQSFFS 344

  Fly   211 DPTDAVRNLRRQDARIIVGLFYVVAARRVLCEMYKQQLYGRAHVWFFIGWYEDNWYEVNLKAEGI 275
            ||...|:||:||||||||||||...||:|.||:||::|:|:.:|||.||||.|||::.  ....|
  Rat   345 DPAVPVKNLKRQDARIIVGLFYETEARKVFCEVYKERLFGKKYVWFLIGWYADNWFKT--YDPSI 407

  Fly   276 TCTVEQMRIAAEGHLTTEALMWNQNNQTTISGMTAEEFRHRLNQALIEEGYDINHDRYPE---GY 337
            .||||:|..|.|||:|||.:|.|..|..:||.||::||..:|.:.|         .|:||   |:
  Rat   408 NCTVEEMTEAVEGHITTEIVMLNPANTRSISNMTSQEFVEKLTKRL---------KRHPEETGGF 463

  Fly   338 QEAPLAYDAVWSVALAFNKTMERLTTGKKSLRDFTYTDKEIADEIYAAMNSTQFLGVSGVVAFSS 402
            |||||||||:|::|||.|||..........|.||.|.::.|.|:||.||||:.|.||||.|.|.:
  Rat   464 QEAPLAYDAIWALALALNKTSGGGGRSGVRLEDFNYNNQTITDQIYRAMNSSSFEGVSGHVVFDA 528

  Fly   403 QGDRIALTQIEQMIDGKYEKLGYYDTQLDNLSWLNTEQWIGGKVPQDRTIVTHVLRTVSLPLFVC 467
            .|.|:|.|.|||:..|.|:|:||||:..|:|||..|::||||..|.|:|:|....|.:|..||:.
  Rat   529 SGSRMAWTLIEQLQGGSYKKIGYYDSTKDDLSWSKTDKWIGGSPPADQTLVIKTFRFLSQKLFIS 593

  Fly   468 MCTISSCGIFVAFALIIFNIWNKHRRVIQSSHPVCNTIMLFGVIICLISVILLGIDGRFVSPEEY 532
            :..:||.||.:|...:.|||:|.|.|.||:|.|..|.:...|..:.|.:|..||:||..:...::
  Rat   594 VSVLSSLGIVLAVVCLSFNIYNSHVRYIQNSQPNLNNLTAVGCSLALAAVFPLGLDGYHIGRSQF 658

  Fly   533 PKICQARAWLLSTGFTLAYGAMFSKVWRVHRFTTK--AKTDPKKKVEPWKLYTMVSGLLSIDLVI 595
            |.:||||.|||..||:|.||:||:|:|.||...||  .|.:.:|.:||||||..|..|:.:|::.
  Rat   659 PFVCQARLWLLGLGFSLGYGSMFTKIWWVHTVFTKKEEKKEWRKTLEPWKLYATVGLLVGMDVLT 723

  Fly   596 LLSWQIFDPLQRYLETFPLEDPVSTTDDIKIRPELEHCESQRNSMWLG----------------- 643
            |..|||.|||.|.:|||..|:|.... |:.|.|:||||.|::.:.|||                 
  Rat   724 LAIWQIVDPLHRTIETFAKEEPKEDI-DVSILPQLEHCSSKKMNTWLGELWSFAVSSDVQRRATV 787

  Fly   644 --------------LVYGFKGLILVFGLFLAYETRSIKVKQINDSRYVGMSIYNVVVLCLITAPV 694
                          :.||:|||:|:.|:||||||:|:..::|||.|.|||:||||.|||||||||
  Rat   788 GGDSPICVWPAPESIFYGYKGLLLLLGIFLAYETKSVSTEKINDHRAVGMAIYNVAVLCLITAPV 852

  Fly   695 GMVIASQQDASFAFVALAVIFCCFLSMLLIFVPKVIEVIRHPKDKAESK--YNPDSAISKEDEER 757
            .|:::|||||:|||.:||::|..:::::::||||:..:|...:.::|::  ....|:.:..:||:
  Rat   853 TMILSSQQDAAFAFASLAIVFSSYITLVVLFVPKMRRLITRGEWQSETQDTMKTGSSTNNNEEEK 917

  Fly   758 YQKLVTENEELQRLITQKEEKIRVLRQRLVER 789
            .:.|..||.||:::|.:|||::..||.:|..|
  Rat   918 SRLLEKENRELEKIIAEKEERVSELRHQLQSR 949

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GABA-B-R1NP_523569.3 PBP1_GABAb_receptor 34..443 CDD:380589 225/411 (55%)
7tmC_GABA-B-R1 463..734 CDD:320418 131/303 (43%)
TM helix 1 463..488 CDD:320418 9/24 (38%)
TM helix 2 500..521 CDD:320418 5/20 (25%)
TM helix 3 537..561 CDD:320418 15/23 (65%)
TM helix 4 581..601 CDD:320418 7/19 (37%)
TM helix 5 638..664 CDD:320418 15/56 (27%)
TM helix 6 673..696 CDD:320418 18/22 (82%)
TM helix 7 703..728 CDD:320418 10/24 (42%)
Gabbr1XP_006255941.1 Sushi 106..156 CDD:459664 1/1 (100%)
PBP1_GABAb_receptor 170..569 CDD:380589 225/411 (55%)
7tmC_GABA-B-R1 589..892 CDD:320418 131/303 (43%)
TM helix 1 589..614 CDD:320418 9/24 (38%)
TM helix 2 626..647 CDD:320418 5/20 (25%)
TM helix 3 663..687 CDD:320418 15/23 (65%)
TM helix 4 709..729 CDD:320418 7/19 (37%)
TM helix 5 765..822 CDD:320418 15/56 (27%)
TM helix 6 831..854 CDD:320418 18/22 (82%)
TM helix 7 861..886 CDD:320418 10/24 (42%)

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