DRSC/TRiP Functional Genomics Resources

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Protein Alignment GABA-B-R1 and atp1b3b

DIOPT Version :9

Sequence 1:NP_001246033.1 Gene:GABA-B-R1 / 34878 FlyBaseID:FBgn0260446 Length:841 Species:Drosophila melanogaster
Sequence 2:NP_571745.1 Gene:atp1b3b / 64272 ZFINID:ZDB-GENE-001127-1 Length:275 Species:Danio rerio


Alignment Length:94 Identity:25/94 - (26%)
Similarity:31/94 - (32%) Gaps:26/94 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 PHLQGGVAG--------RPDELHIG-GIFPIAGKGGWQGGQACMPAARLALDDVNKQPNLLPGFK 75
            ||:...|.|        .|||..|. ..||..||               .|.....||  |...|
Zfish   184 PHIACTVKGDGTLQMQLYPDEGKIDKSFFPYYGK---------------ILHKNYVQP--LVAVK 231

  Fly    76 LILHSNDSECEPGLGASVMYNLLYNKPQK 104
            |:|..||...|..:...|..:.|.|..::
Zfish   232 LMLGENDYNIEHTVECKVEGSDLLNNDER 260

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GABA-B-R1NP_001246033.1 PBP1_GABAb_receptor 34..437 CDD:107361 18/72 (25%)
ANF_receptor 52..415 CDD:279440 13/53 (25%)
7tm_3 476..730 CDD:278433
atp1b3bNP_571745.1 Na_K-ATPase 10..268 CDD:278704 25/94 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3927
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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