DRSC/TRiP Functional Genomics Resources

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Protein Alignment GABA-B-R1 and gabbr1b

DIOPT Version :10

Sequence 1:NP_523569.3 Gene:GABA-B-R1 / 34878 FlyBaseID:FBgn0260446 Length:841 Species:Drosophila melanogaster
Sequence 2:XP_005170159.1 Gene:gabbr1b / 558708 ZFINID:ZDB-GENE-060503-5 Length:994 Species:Danio rerio


Alignment Length:804 Identity:394/804 - (49%)
Similarity:548/804 - (68%) Gaps:39/804 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 ELHIGGIFPIAGKGGWQGGQACMPAARLALDDVNKQPNLLPGFKLILHSNDSECEPGLGASVMYN 96
            :|:||.:||::  |||.|||||:|||::|||.|||:.::||.::|.|...||.|:||....::|:
Zfish   165 KLYIGALFPMS--GGWPGGQACLPAAQMALDLVNKRTDILPDYELELIHYDSMCDPGEATKLLYD 227

  Fly    97 LLYNKPQKLMLLAGCSTVCTTVAEAAKMWNLIVLCYGASSPALSDRKRFPTLFRTHPSATVHNPT 161
            |||.:|.|::|:.|||:|.|.|||||:|||||||.||:||||||:|:||||.||||||||:||||
Zfish   228 LLYTEPIKIVLMPGCSSVSTLVAEAARMWNLIVLSYGSSSPALSNRQRFPTFFRTHPSATLHNPT 292

  Fly   162 RIKLMKKFGWSRVAILQQAEEVFISTVEDLENRCMEAGVEIVTRQSFLSDPTDAVRNLRRQDARI 226
            |::|.:|:.|:::|.:||..|||.||::|||.|..|||:||..|||||:||..||:||:||||||
Zfish   293 RVQLFQKWKWTKIATIQQTTEVFTSTLDDLEQRVKEAGIEISVRQSFLTDPAVAVKNLKRQDARI 357

  Fly   227 IVGLFYVVAARRVLCEMYKQQLYGRAHVWFFIGWYEDNWYEVNLKAEGITCTVEQMRIAAEGHLT 291
            ||||||...||:|.||:||::|||:.:|||.||||.|||:::  |...|.||||||..|.|||:|
Zfish   358 IVGLFYETEARKVFCEVYKEKLYGKKYVWFLIGWYADNWFKI--KDPSINCTVEQMTEAVEGHVT 420

  Fly   292 TEALMWNQNNQTTISGMTAEEFRHRLNQALIEEGYDINHDRYPE---GYQEAPLAYDAVWSVALA 353
            ||.:|.|.......|.:|::||   |.|.:.:.|     .:.||   |:|||||||||||::|||
Zfish   421 TEIVMLNPETVRGASNLTSQEF---LAQLMSKLG-----GKNPEETGGFQEAPLAYDAVWALALA 477

  Fly   354 FNKTMERLTTGKKSLRDFTYTDKEIADEIYAAMNSTQFLGVSGVVAFSSQGDRIALTQIEQMIDG 418
            .|||:..|....:.|.||.|.:|:|..|||.|:|::.|.||||.|.|.:||.|:|.|.|||:..|
Zfish   478 LNKTVGPLKAKGRRLEDFNYNNKDITAEIYRALNTSSFEGVSGHVVFDAQGSRMAWTLIEQLQGG 542

  Fly   419 KYEKLGYYDTQLDNLSWLNTEQWIGGKVPQDRTIVTHVLRTVSLPLFVCMCTISSCGIFVAFALI 483
            .|:|:||||....||||...::|||...|.|:|:|....|.:|..|||.:...:..||.:....:
Zfish   543 SYKKIGYYDMTKGNLSWYGNDRWIGSGPPADQTVVIQKFRYLSQKLFVSVSVFAGLGILMGIVCL 607

  Fly   484 IFNIWNKHRRVIQSSHPVCNTIMLFGVIICLISVILLGIDGRFVSPEEYPKICQARAWLLSTGFT 548
            .|||:|.:.|.||:|.|..|.:...|.::.|.:|..|||||..|...::|.:||.|.|||..||:
Zfish   608 TFNIYNSNVRYIQNSQPYLNNMTAVGCMMALAAVFPLGIDGLHVRNSQFPVVCQFRLWLLGLGFS 672

  Fly   549 LAYGAMFSKVWRVHRFTTK--AKTDPKKK-VEPWKLYTMVSGLLSIDLVILLSWQIFDPLQRYLE 610
            ||||:||:|:|.||...||  .|.|.:|: :||||||..|..||.||::.|:.|||.|||...:|
Zfish   673 LAYGSMFTKIWWVHTVFTKKDEKKDKRKQHLEPWKLYATVGVLLVIDILSLMIWQIVDPLHITVE 737

  Fly   611 TFPLEDPVSTTDDIKIRPELEHCESQRNSMWLGLVYGFKGLILVFGLFLAYETRSIKVKQINDSR 675
            .|..|.|....|:: |.|.|:||.|::.:.|||:|||:|||:|:.|:||||||:|:..::|||.|
Zfish   738 KFTKEAPKGDVDEL-IEPLLQHCSSEKMNTWLGVVYGYKGLLLLLGIFLAYETKSVSTEKINDHR 801

  Fly   676 YVGMSIYNVVVLCLITAPVGMVIASQQDASFAFVALAVIFCCFLSMLLIFVPKVIEVIRH---PK 737
            .|||:||||.|||:|||||.|:::|:|||||||.:||:||..:::::::||||:..:|..   ..
Zfish   802 AVGMAIYNVSVLCMITAPVTMILSSKQDASFAFASLAIIFSVYITLVVLFVPKMRRLITRGEWQS 866

  Fly   738 DKAESKYNPDSAISKEDEERYQKLVTENEELQRLITQKEEKIRVLRQRLVERGDAKGTELNGATG 802
            |:.|: ....|:.:..|||:.::|..||:|||::|.:|||::..||.:|.||             
Zfish   867 DQQET-MKTGSSTNNNDEEKSRQLERENKELQKIIQEKEERVSELRNQLSER------------- 917

  Fly   803 VASAAVATTSQPASLINSSAHATP 826
               .|:.:..:|.|..|.|:.:.|
Zfish   918 ---QALRSRKRPTSNQNHSSPSIP 938

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GABA-B-R1NP_523569.3 PBP1_GABAb_receptor 34..443 CDD:380589 226/411 (55%)
7tmC_GABA-B-R1 463..734 CDD:320418 131/273 (48%)
TM helix 1 463..488 CDD:320418 7/24 (29%)
TM helix 2 500..521 CDD:320418 5/20 (25%)
TM helix 3 537..561 CDD:320418 15/23 (65%)
TM helix 4 581..601 CDD:320418 9/19 (47%)
TM helix 5 638..664 CDD:320418 16/25 (64%)
TM helix 6 673..696 CDD:320418 17/22 (77%)
TM helix 7 703..728 CDD:320418 12/24 (50%)
gabbr1bXP_005170159.1 CCP 97..154 CDD:214478
PBP1_GABAb_receptor 167..567 CDD:380589 226/411 (55%)
7tmC_GABA-B-R1 587..860 CDD:320418 131/273 (48%)
TM helix 1 587..612 CDD:320418 7/24 (29%)
TM helix 2 624..645 CDD:320418 5/20 (25%)
TM helix 3 661..685 CDD:320418 15/23 (65%)
TM helix 4 708..728 CDD:320418 9/19 (47%)
TM helix 5 764..790 CDD:320418 16/25 (64%)
TM helix 6 799..822 CDD:320418 17/22 (77%)
TM helix 7 829..854 CDD:320418 12/24 (50%)
DD_cGKI 895..>923 CDD:473057 13/43 (30%)
Blue background indicates that the domain is not in the aligned region.

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