DRSC/TRiP Functional Genomics Resources

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Protein Alignment GABA-B-R1 and gabbr1b

DIOPT Version :9

Sequence 1:NP_001246033.1 Gene:GABA-B-R1 / 34878 FlyBaseID:FBgn0260446 Length:841 Species:Drosophila melanogaster
Sequence 2:XP_005170159.1 Gene:gabbr1b / 558708 ZFINID:ZDB-GENE-060503-5 Length:994 Species:Danio rerio


Alignment Length:804 Identity:394/804 - (49%)
Similarity:548/804 - (68%) Gaps:39/804 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 ELHIGGIFPIAGKGGWQGGQACMPAARLALDDVNKQPNLLPGFKLILHSNDSECEPGLGASVMYN 96
            :|:||.:||::  |||.|||||:|||::|||.|||:.::||.::|.|...||.|:||....::|:
Zfish   165 KLYIGALFPMS--GGWPGGQACLPAAQMALDLVNKRTDILPDYELELIHYDSMCDPGEATKLLYD 227

  Fly    97 LLYNKPQKLMLLAGCSTVCTTVAEAAKMWNLIVLCYGASSPALSDRKRFPTLFRTHPSATVHNPT 161
            |||.:|.|::|:.|||:|.|.|||||:|||||||.||:||||||:|:||||.||||||||:||||
Zfish   228 LLYTEPIKIVLMPGCSSVSTLVAEAARMWNLIVLSYGSSSPALSNRQRFPTFFRTHPSATLHNPT 292

  Fly   162 RIKLMKKFGWSRVAILQQAEEVFISTVEDLENRCMEAGVEIVTRQSFLSDPTDAVRNLRRQDARI 226
            |::|.:|:.|:::|.:||..|||.||::|||.|..|||:||..|||||:||..||:||:||||||
Zfish   293 RVQLFQKWKWTKIATIQQTTEVFTSTLDDLEQRVKEAGIEISVRQSFLTDPAVAVKNLKRQDARI 357

  Fly   227 IVGLFYVVAARRVLCEMYKQQLYGRAHVWFFIGWYEDNWYEVNLKAEGITCTVEQMRIAAEGHLT 291
            ||||||...||:|.||:||::|||:.:|||.||||.|||:::  |...|.||||||..|.|||:|
Zfish   358 IVGLFYETEARKVFCEVYKEKLYGKKYVWFLIGWYADNWFKI--KDPSINCTVEQMTEAVEGHVT 420

  Fly   292 TEALMWNQNNQTTISGMTAEEFRHRLNQALIEEGYDINHDRYPE---GYQEAPLAYDAVWSVALA 353
            ||.:|.|.......|.:|::||   |.|.:.:.|     .:.||   |:|||||||||||::|||
Zfish   421 TEIVMLNPETVRGASNLTSQEF---LAQLMSKLG-----GKNPEETGGFQEAPLAYDAVWALALA 477

  Fly   354 FNKTMERLTTGKKSLRDFTYTDKEIADEIYAAMNSTQFLGVSGVVAFSSQGDRIALTQIEQMIDG 418
            .|||:..|....:.|.||.|.:|:|..|||.|:|::.|.||||.|.|.:||.|:|.|.|||:..|
Zfish   478 LNKTVGPLKAKGRRLEDFNYNNKDITAEIYRALNTSSFEGVSGHVVFDAQGSRMAWTLIEQLQGG 542

  Fly   419 KYEKLGYYDTQLDNLSWLNTEQWIGGKVPQDRTIVTHVLRTVSLPLFVCMCTISSCGIFVAFALI 483
            .|:|:||||....||||...::|||...|.|:|:|....|.:|..|||.:...:..||.:....:
Zfish   543 SYKKIGYYDMTKGNLSWYGNDRWIGSGPPADQTVVIQKFRYLSQKLFVSVSVFAGLGILMGIVCL 607

  Fly   484 IFNIWNKHRRVIQSSHPVCNTIMLFGVIICLISVILLGIDGRFVSPEEYPKICQARAWLLSTGFT 548
            .|||:|.:.|.||:|.|..|.:...|.::.|.:|..|||||..|...::|.:||.|.|||..||:
Zfish   608 TFNIYNSNVRYIQNSQPYLNNMTAVGCMMALAAVFPLGIDGLHVRNSQFPVVCQFRLWLLGLGFS 672

  Fly   549 LAYGAMFSKVWRVHRFTTK--AKTDPKKK-VEPWKLYTMVSGLLSIDLVILLSWQIFDPLQRYLE 610
            ||||:||:|:|.||...||  .|.|.:|: :||||||..|..||.||::.|:.|||.|||...:|
Zfish   673 LAYGSMFTKIWWVHTVFTKKDEKKDKRKQHLEPWKLYATVGVLLVIDILSLMIWQIVDPLHITVE 737

  Fly   611 TFPLEDPVSTTDDIKIRPELEHCESQRNSMWLGLVYGFKGLILVFGLFLAYETRSIKVKQINDSR 675
            .|..|.|....|:: |.|.|:||.|::.:.|||:|||:|||:|:.|:||||||:|:..::|||.|
Zfish   738 KFTKEAPKGDVDEL-IEPLLQHCSSEKMNTWLGVVYGYKGLLLLLGIFLAYETKSVSTEKINDHR 801

  Fly   676 YVGMSIYNVVVLCLITAPVGMVIASQQDASFAFVALAVIFCCFLSMLLIFVPKVIEVIRH---PK 737
            .|||:||||.|||:|||||.|:::|:|||||||.:||:||..:::::::||||:..:|..   ..
Zfish   802 AVGMAIYNVSVLCMITAPVTMILSSKQDASFAFASLAIIFSVYITLVVLFVPKMRRLITRGEWQS 866

  Fly   738 DKAESKYNPDSAISKEDEERYQKLVTENEELQRLITQKEEKIRVLRQRLVERGDAKGTELNGATG 802
            |:.|: ....|:.:..|||:.::|..||:|||::|.:|||::..||.:|.||             
Zfish   867 DQQET-MKTGSSTNNNDEEKSRQLERENKELQKIIQEKEERVSELRNQLSER------------- 917

  Fly   803 VASAAVATTSQPASLINSSAHATP 826
               .|:.:..:|.|..|.|:.:.|
Zfish   918 ---QALRSRKRPTSNQNHSSPSIP 938

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GABA-B-R1NP_001246033.1 PBP1_GABAb_receptor 34..437 CDD:107361 225/405 (56%)
ANF_receptor 52..415 CDD:279440 203/365 (56%)
7tm_3 476..730 CDD:278433 127/256 (50%)
gabbr1bXP_005170159.1 CCP 97..154 CDD:214478
PBP1_GABAb_receptor 167..560 CDD:107361 224/404 (55%)
ANF_receptor 183..540 CDD:279440 204/366 (56%)
7tm_3 600..855 CDD:278433 126/255 (49%)
DD_cGKI 895..>923 CDD:213458 13/43 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170596231
Domainoid 1 1.000 406 1.000 Domainoid score I678
eggNOG 1 0.900 - - E1_KOG1055
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H1132
Inparanoid 1 1.050 772 1.000 Inparanoid score I520
OMA 1 1.010 - - QHG49267
OrthoDB 1 1.010 - - D267884at33208
OrthoFinder 1 1.000 - - FOG0006100
OrthoInspector 1 1.000 - - otm26065
orthoMCL 1 0.900 - - OOG6_105862
Panther 1 1.100 - - LDO PTHR10519
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3034
SonicParanoid 1 1.000 - - X4397
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1615.800

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