DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GABA-B-R1 and Gabbr1

DIOPT Version :10

Sequence 1:NP_523569.3 Gene:GABA-B-R1 / 34878 FlyBaseID:FBgn0260446 Length:841 Species:Drosophila melanogaster
Sequence 2:NP_062312.3 Gene:Gabbr1 / 54393 MGIID:1860139 Length:960 Species:Mus musculus


Alignment Length:781 Identity:388/781 - (49%)
Similarity:536/781 - (68%) Gaps:27/781 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 PHLQGGVAGRPDE----LHIGGIFPIAGKGGWQGGQACMPAARLALDDVNKQPNLLPGFKLILHS 80
            ||.|  |...|..    ::||.:||::  |||.|||||.||..:||:|||.:.::||.::|.|..
Mouse   154 PHCQ--VNRTPHSERRAVYIGALFPMS--GGWPGGQACQPAVEMALEDVNSRRDILPDYELKLIH 214

  Fly    81 NDSECEPGLGASVMYNLLYNKPQKLMLLAGCSTVCTTVAEAAKMWNLIVLCYGASSPALSDRKRF 145
            :||:|:||.....:|.||||.|.|::|:.|||:|.|.|||||:|||||||.||:||||||:|:||
Mouse   215 HDSKCDPGQATKYLYELLYNDPIKIILMPGCSSVSTLVAEAARMWNLIVLSYGSSSPALSNRQRF 279

  Fly   146 PTLFRTHPSATVHNPTRIKLMKKFGWSRVAILQQAEEVFISTVEDLENRCMEAGVEIVTRQSFLS 210
            ||.||||||||:|||||:||.:|:||.::|.:||..|||.||::|||.|..|||:||..||||.|
Mouse   280 PTFFRTHPSATLHNPTRVKLFEKWGWKKIATIQQTTEVFTSTLDDLEERVKEAGIEITFRQSFFS 344

  Fly   211 DPTDAVRNLRRQDARIIVGLFYVVAARRVLCEMYKQQLYGRAHVWFFIGWYEDNWYEVNLKAEGI 275
            ||...|:||:||||||||||||...||:|.||:||::|:|:.:|||.||||.|||::.  ....|
Mouse   345 DPAVPVKNLKRQDARIIVGLFYETEARKVFCEVYKERLFGKKYVWFLIGWYADNWFKT--YDPSI 407

  Fly   276 TCTVEQMRIAAEGHLTTEALMWNQNNQTTISGMTAEEFRHRLNQALIEEGYDINHDRYPE---GY 337
            .||||:|..|.|||:|||.:|.|..|..:||.||::||..:|.:.|         .|:||   |:
Mouse   408 NCTVEEMTEAVEGHITTEIVMLNPANTRSISNMTSQEFVEKLTKRL---------KRHPEETGGF 463

  Fly   338 QEAPLAYDAVWSVALAFNKTMERLTTGKKSLRDFTYTDKEIADEIYAAMNSTQFLGVSGVVAFSS 402
            |||||||||:|::|||.|||..........|.||.|.::.|.|:||.||||:.|.||||.|.|.:
Mouse   464 QEAPLAYDAIWALALALNKTSGGGGRSGVRLEDFNYNNQTITDQIYRAMNSSSFEGVSGHVVFDA 528

  Fly   403 QGDRIALTQIEQMIDGKYEKLGYYDTQLDNLSWLNTEQWIGGKVPQDRTIVTHVLRTVSLPLFVC 467
            .|.|:|.|.|||:..|.|:|:||||:..|:|||..|::||||..|.|:|:|....|.:|..||:.
Mouse   529 SGSRMAWTLIEQLQGGSYKKIGYYDSTKDDLSWSKTDKWIGGSPPADQTLVIKTFRFLSQKLFIS 593

  Fly   468 MCTISSCGIFVAFALIIFNIWNKHRRVIQSSHPVCNTIMLFGVIICLISVILLGIDGRFVSPEEY 532
            :..:||.||.:|...:.|||:|.|.|.||:|.|..|.:...|..:.|.:|..||:||..:...::
Mouse   594 VSVLSSLGIVLAVVCLSFNIYNSHVRYIQNSQPNLNNLTAVGCSLALAAVFPLGLDGYHIGRSQF 658

  Fly   533 PKICQARAWLLSTGFTLAYGAMFSKVWRVHRFTTK--AKTDPKKKVEPWKLYTMVSGLLSIDLVI 595
            |.:||||.|||..||:|.||:||:|:|.||...||  .|.:.:|.:||||||..|..|:.:|::.
Mouse   659 PFVCQARLWLLGLGFSLGYGSMFTKIWWVHTVFTKKEEKKEWRKTLEPWKLYATVGLLVGMDILT 723

  Fly   596 LLSWQIFDPLQRYLETFPLEDPVSTTDDIKIRPELEHCESQRNSMWLGLVYGFKGLILVFGLFLA 660
            |..|||.|||.|.:|||..|:|.... |:.|.|:||||.|::.:.|||:.||:|||:|:.|:|||
Mouse   724 LAIWQIVDPLHRTIETFAKEEPKEDI-DVSILPQLEHCSSKKMNTWLGIFYGYKGLLLLLGIFLA 787

  Fly   661 YETRSIKVKQINDSRYVGMSIYNVVVLCLITAPVGMVIASQQDASFAFVALAVIFCCFLSMLLIF 725
            |||:|:..::|||.|.|||:||||.|||||||||.|:::|||||:|||.:||::|..:::::::|
Mouse   788 YETKSVSTEKINDHRAVGMAIYNVAVLCLITAPVTMILSSQQDAAFAFASLAIVFSSYITLVVLF 852

  Fly   726 VPKVIEVIRHP--KDKAESKYNPDSAISKEDEERYQKLVTENEELQRLITQKEEKIRVLRQRLVE 788
            |||:..:|...  :.:|:......|:.:..:||:.:.|..||.||:::|.:|||::..||.:|..
Mouse   853 VPKMRRLITRGEWQSEAQDTMKTGSSTNNNEEEKSRLLEKENRELEKIIAEKEERVSELRHQLQS 917

  Fly   789 R 789
            |
Mouse   918 R 918

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GABA-B-R1NP_523569.3 PBP1_GABAb_receptor 34..443 CDD:380589 225/411 (55%)
7tmC_GABA-B-R1 463..734 CDD:320418 131/272 (48%)
TM helix 1 463..488 CDD:320418 9/24 (38%)
TM helix 2 500..521 CDD:320418 5/20 (25%)
TM helix 3 537..561 CDD:320418 15/23 (65%)
TM helix 4 581..601 CDD:320418 7/19 (37%)
TM helix 5 638..664 CDD:320418 15/25 (60%)
TM helix 6 673..696 CDD:320418 18/22 (82%)
TM helix 7 703..728 CDD:320418 10/24 (42%)
Gabbr1NP_062312.3 Sushi 106..156 CDD:459664 1/1 (100%)
PBP1_GABAb_receptor 170..569 CDD:380589 225/411 (55%)
7tmC_GABA-B-R1 589..861 CDD:320418 131/272 (48%)
TM helix 1 589..614 CDD:320418 9/24 (38%)
TM helix 2 626..647 CDD:320418 5/20 (25%)
TM helix 3 663..687 CDD:320418 15/23 (65%)
TM helix 4 709..729 CDD:320418 7/19 (37%)
TM helix 5 765..791 CDD:320418 15/25 (60%)
TM helix 6 800..823 CDD:320418 18/22 (82%)
TM helix 7 830..855 CDD:320418 10/24 (42%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 866..891 4/24 (17%)
Interaction with ATF4. /evidence=ECO:0000250 887..915 11/27 (41%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 908..960 4/11 (36%)

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