DRSC/TRiP Functional Genomics Resources

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Protein Alignment GABA-B-R1 and GABA-B-R2

DIOPT Version :10

Sequence 1:NP_523569.3 Gene:GABA-B-R1 / 34878 FlyBaseID:FBgn0260446 Length:841 Species:Drosophila melanogaster
Sequence 2:NP_001287456.1 Gene:GABA-B-R2 / 42561 FlyBaseID:FBgn0027575 Length:1224 Species:Drosophila melanogaster


Alignment Length:916 Identity:289/916 - (31%)
Similarity:471/916 - (51%) Gaps:123/916 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 LLCLIASPHLQGGVAGRPDELHIGGIFPIA-GKGGWQGGQACMPAARLALDDVNKQPNLLPGFKL 76
            ||.|:......|..|.|.| ::|.|.||.. |......|:..||:.:|||..||:...:|..::|
  Fly    12 LLFLLLWSTACGRTAKRSD-VYIAGFFPYGDGVENSYTGRGVMPSVKLALGHVNEHGKILANYRL 75

  Fly    77 ILHSNDSECEPGLGASVMYNLLYNKPQKLMLL-AGCSTVCTTVAEAAKMWNLIVLCYGASSPALS 140
            .:..||::|...:|....::::::.|.|:||. |.|:.|...:|:|:|.|:|..|.|..:.|..:
  Fly    76 HMWWNDTQCNAAVGVKSFFDMMHSGPNKVMLFGAACTHVTDPIAKASKHWHLTQLSYADTHPMFT 140

  Fly   141 DRKRFPTLFRTHPSATVHNPTRIKLMKKFGWSRVAILQQAEEVFI----STVEDLENRCMEAGVE 201
             :..||..||..||....|..|:.|:|:|.|:||..:.|.|..:.    ..|.||:  .||  ||
  Fly   141 -KDAFPNFFRVVPSENAFNAPRLALLKEFNWTRVGTVYQNEPRYSLPHNHMVADLD--AME--VE 200

  Fly   202 IVTRQSFLSDPTDAVRNLRRQDARIIVGLFYVVAARRVLCEMYKQQLYGRAHVWFFIGWYEDNWY 266
            :|..|||::|..::::.||.:|.|||:|.|....||:..||.||..:||||:.|..:..|..:|:
  Fly   201 VVETQSFVNDVAESLKKLREKDVRIILGNFNEHFARKAFCEAYKLDMYGRAYQWLIMATYSTDWW 265

  Fly   267 EVNLKAEGITCTVEQMRIAAEGHLTTEALMWNQNNQTTISGMTAEEFRHRLNQALIEEGYD---- 327
            .|...:|   |:||::..|.||.:..:.|..:.:...|::|:||:|:       |:|  ||    
  Fly   266 NVTQDSE---CSVEEIATALEGAILVDLLPLSTSGDITVAGITADEY-------LVE--YDRLRG 318

  Fly   328 INHDRYPEGYQEAPLAYDAVWSVALAFNKTMERLTTGKKSLRDFTYTDKEIADEIYAAMNSTQFL 392
            ..:.|: .||     .||.:|:.|||.....|:   .:..|..|.|..|:.......|:.:|.|.
  Fly   319 TEYSRF-HGY-----TYDGIWAAALAIQYVAEK---REDLLTHFDYRVKDWESVFLEALRNTSFE 374

  Fly   393 GVSGVVAFSSQGDRIALTQIEQMIDGKYEKLGYYDTQ---LDNLSWLNTEQWIGGKVPQDRTIVT 454
            ||:|.|.|.: .:|.|...|.|...|:.||:|.|.:|   || ||.....:|:|...|:|||::.
  Fly   375 GVTGPVRFYN-NERKANILINQFQLGQMEKIGEYHSQKSHLD-LSLGKPVKWVGKTPPKDRTLIY 437

  Fly   455 HVLRTVSLPLFVCMCTISSCGIFVAFALIIFNIWNKHRRVIQSSHPVCNTIMLFGVIICLISVIL 519
            .....|:..:::...:.|..|:.:|...:.|||..:::|.|:.|.|..|.:::.|.::..:|:|.
  Fly   438 IEHSQVNPTIYIVSASASVIGVIIATVFLAFNIKYRNQRYIKMSSPHLNNLIIVGCMMTYLSIIF 502

  Fly   520 LGIDGRFVSPEEYPKICQARAWLLSTGFTLAYGAMFSKVWRVHRFTTKAKTDPKKKVEPWKLYTM 584
            ||:|....|...:|.||.||||:|..||:|::||||||.||||...|..|.: ||.::.::|:.:
  Fly   503 LGLDTTLSSVAAFPYICTARAWILMAGFSLSFGAMFSKTWRVHSIFTDLKLN-KKVIKDYQLFMV 566

  Fly   585 VSGLLSIDLVILLSWQIFDPLQRYLETFPLEDPV--STTDDIKIRPELEHCESQRNSMWLGLVYG 647
            |..||:||:.|:.:|||.||.  |.||..|| |:  ...||:.:.||.|:|:|:..::::.::|.
  Fly   567 VGVLLAIDIAIITTWQIADPF--YRETKQLE-PLHHENIDDVLVIPENEYCQSEHMTIFVSIIYA 628

  Fly   648 FKGLILVFGLFLAYETRSIKVKQINDSRYVGMSIYNVVVLCLITAPVGMVIASQQDASFAFVALA 712
            :|||:||||.|||:|||.:.:..:|||:::|.|:|||.:.||..|.:.:|::.::|..|..::..
  Fly   629 YKGLLLVFGAFLAWETRHVSIPALNDSKHIGFSVYNVFITCLAGAAISLVLSDRKDLVFVLLSFF 693

  Fly   713 VIFCCFLSMLLIFVPKV----IEVIRHPK---DK-AESKYNPDSAISKED------EERYQKLVT 763
            :|||...::.|:|||||    :|:.|:|:   || ..:...|.|...:.|      |:|.:.:..
  Fly   694 IIFCTTATLCLVFVPKVRLVLVELKRNPQGVVDKRVRATLRPMSKNGRRDSSVCELEQRLRDVKN 758

  Fly   764 ENEELQRLITQKEEKIRVLRQRL------------VERGDAKGTEL------------------- 797
            .|...::.:.:||.:::.|.::|            ...|...|:||                   
  Fly   759 TNCRFRKALMEKENELQALIRKLGPEARKWIDGVTCTGGSNVGSELEPILNDDIVRLSAPPVRRE 823

  Fly   798 -----------------------NGATGVASAAVATTSQP----ASLINSSAHATPAATL--AIT 833
                                   |....|.|..:|.:..|    .|::...:|| ||.|:  .|.
  Fly   824 MPSTTVTEMTSVDSVTSTHVEMDNSFVSVQSTVMAPSLPPKKKKQSIVEHHSHA-PAPTMMQPIQ 887

  Fly   834 QDTHEH 839
            |...:|
  Fly   888 QQLQQH 893

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GABA-B-R1NP_523569.3 PBP1_GABAb_receptor 34..443 CDD:380589 138/421 (33%)
7tmC_GABA-B-R1 463..734 CDD:320418 106/276 (38%)
TM helix 1 463..488 CDD:320418 5/24 (21%)
TM helix 2 500..521 CDD:320418 5/20 (25%)
TM helix 3 537..561 CDD:320418 15/23 (65%)
TM helix 4 581..601 CDD:320418 8/19 (42%)
TM helix 5 638..664 CDD:320418 12/25 (48%)
TM helix 6 673..696 CDD:320418 10/22 (45%)
TM helix 7 703..728 CDD:320418 8/24 (33%)
GABA-B-R2NP_001287456.1 PBP1_GABAb_receptor 32..426 CDD:380589 138/421 (33%)
7tmC_GABA-B-R2 446..719 CDD:320421 106/276 (38%)
TM helix 1 446..471 CDD:320421 5/24 (21%)
TM helix 2 483..504 CDD:320421 5/20 (25%)
TM helix 3 520..544 CDD:320421 15/23 (65%)
TM helix 4 563..583 CDD:320421 8/19 (42%)
TM helix 5 619..645 CDD:320421 12/25 (48%)
TM helix 6 654..677 CDD:320421 10/22 (45%)
TM helix 7 684..709 CDD:320421 8/24 (33%)
PHA03307 934..>1161 CDD:223039
Blue background indicates that the domain is not in the aligned region.

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