DRSC/TRiP Functional Genomics Resources

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Protein Alignment GABA-B-R1 and gabbr1a

DIOPT Version :10

Sequence 1:NP_523569.3 Gene:GABA-B-R1 / 34878 FlyBaseID:FBgn0260446 Length:841 Species:Drosophila melanogaster
Sequence 2:XP_694497.5 Gene:gabbr1a / 373873 ZFINID:ZDB-GENE-030904-5 Length:988 Species:Danio rerio


Alignment Length:803 Identity:389/803 - (48%)
Similarity:541/803 - (67%) Gaps:36/803 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 ELHIGGIFPIAGKGGWQGGQACMPAARLALDDVNKQPNLLPGFKLILHSNDSECEPGLGASVMYN 96
            :|:||.:||::  |||.|||||:|||::|||.||.:.::||.::|.|...||.|:||....::|:
Zfish   166 KLYIGALFPMS--GGWPGGQACLPAAQMALDLVNNRSDILPDYELELIHYDSMCDPGEATKLLYD 228

  Fly    97 LLYNKPQKLMLLAGCSTVCTTVAEAAKMWNLIVLCYGASSPALSDRKRFPTLFRTHPSATVHNPT 161
            |||.:|.|::|:.|||:|.|.|||||:||||||..||:||||||:|:||||.||||||||:||||
Zfish   229 LLYTEPIKIVLMPGCSSVSTLVAEAARMWNLIVFSYGSSSPALSNRQRFPTFFRTHPSATLHNPT 293

  Fly   162 RIKLMKKFGWSRVAILQQAEEVFISTVEDLENRCMEAGVEIVTRQSFLSDPTDAVRNLRRQDARI 226
            |::|.:|:.|:::|.:||..|||.||::|||.|..||.:||..|||||:||..||:||:||||||
Zfish   294 RVRLFQKWEWTKIATIQQTTEVFTSTLDDLEERVKEANIEISVRQSFLTDPAVAVKNLKRQDARI 358

  Fly   227 IVGLFYVVAARRVLCEMYKQQLYGRAHVWFFIGWYEDNWYEVNLKAEGITCTVEQMRIAAEGHLT 291
            ||||||...||:|.||::|::|||:.:|||.||||.|||:::  |...|.||||.|..|.|||:|
Zfish   359 IVGLFYETEARKVFCEVFKEKLYGKKYVWFLIGWYADNWFKI--KDPAINCTVENMTEAVEGHIT 421

  Fly   292 TEALMWNQNNQTTISGMTAEEFRHRLNQALIEEGYDINHDRYPE---GYQEAPLAYDAVWSVALA 353
            ||.:|.|.......|.:|::||..:|...|        ..:.||   |:|||||||||||::|||
Zfish   422 TEIVMLNPETVRGASNLTSQEFIAQLMSRL--------GGKNPEETGGFQEAPLAYDAVWALALA 478

  Fly   354 FNKTMERLTTGKKSLRDFTYTDKEIADEIYAAMNSTQFLGVSGVVAFSSQGDRIALTQIEQMIDG 418
            .|||:..|......|.||.|.:|||..|||.|:|::.|.||||.|.|.:||.|:|.|.|||:..|
Zfish   479 LNKTVAPLRAKGWGLEDFNYNNKEITAEIYRALNTSSFEGVSGHVVFDAQGSRMAWTLIEQLQGG 543

  Fly   419 KYEKLGYYDTQLDNLSWLNTEQWIGGKVPQDRTIVTHVLRTVSLPLFVCMCTISSCGIFVAFALI 483
            .|:|:||||:...||||...::|||...|.|:|.|....|.:|..|||.:...:..||.:....:
Zfish   544 SYKKIGYYDSTKGNLSWYGNDKWIGLSPPADQTKVIKEFRYLSQKLFVSVSVFAGLGILLGIVCL 608

  Fly   484 IFNIWNKHRRVIQSSHPVCNTIMLFGVIICLISVILLGIDGRFVSPEEYPKICQARAWLLSTGFT 548
            .|||:|...|.||:|.|..|.:...|.::.|.:|..|||||..|...::|.:||.|.|||..||:
Zfish   609 SFNIYNSSVRYIQNSQPYLNNMTAVGCVLALAAVFPLGIDGLHVRRSQFPVVCQFRLWLLGLGFS 673

  Fly   549 LAYGAMFSKVWRVHRFTTK--AKTDPKKKVEPWKLYTMVSGLLSIDLVILLSWQIFDPLQRYLET 611
            ||||:||:|:|.||...||  .|.:.:|.:||||||..|:.||:||::.||.|||.|||...:|.
Zfish   674 LAYGSMFTKIWWVHTVFTKKDEKKEKRKHLEPWKLYATVAVLLAIDVLSLLIWQIMDPLHITVEQ 738

  Fly   612 FPLEDPVSTTDDIKIRPELEHCESQRNSMWLGLVYGFKGLILVFGLFLAYETRSIKVKQINDSRY 676
            |..|.|.... |:.|:|.||||.|::.:.|||:|||:|||:|:.|:||||||:||..::|||.|.
Zfish   739 FTKEAPKEDL-DVLIQPLLEHCSSKKMNTWLGVVYGYKGLLLLLGIFLAYETKSISTEKINDHRA 802

  Fly   677 VGMSIYNVVVLCLITAPVGMVIASQQDASFAFVALAVIFCCFLSMLLIFVPKVIEVIRHPKDKAE 741
            |||:||||.|||:|||||.|:::|||||||||.:||:||..:::::::||||:..:|...:.::|
Zfish   803 VGMAIYNVAVLCMITAPVTMILSSQQDASFAFASLAIIFSVYITLVVLFVPKIRRLITRGEWQSE 867

  Fly   742 SK--YNPDSAISKEDEERYQKLVTENEELQRLITQKEEKIRVLRQRLVERGDAKGTELNGATGVA 804
            .:  ....|:.:..|||:.::|..||.|||::|.:|||::..||.:|.||               
Zfish   868 QQDTLKTGSSTNNNDEEKSRQLERENRELQKIIQEKEERVTELRSQLAER--------------- 917

  Fly   805 SAAVATTSQPASLINSSAHATPA 827
             .|:.:..:|:....:..|:.|:
Zfish   918 -QALRSRRRPSVQNQNQNHSVPS 939

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GABA-B-R1NP_523569.3 PBP1_GABAb_receptor 34..443 CDD:380589 221/411 (54%)
7tmC_GABA-B-R1 463..734 CDD:320418 134/272 (49%)
TM helix 1 463..488 CDD:320418 7/24 (29%)
TM helix 2 500..521 CDD:320418 5/20 (25%)
TM helix 3 537..561 CDD:320418 15/23 (65%)
TM helix 4 581..601 CDD:320418 10/19 (53%)
TM helix 5 638..664 CDD:320418 16/25 (64%)
TM helix 6 673..696 CDD:320418 17/22 (77%)
TM helix 7 703..728 CDD:320418 12/24 (50%)
gabbr1aXP_694497.5 CCP 98..155 CDD:214478
PBP1_GABAb_receptor 168..568 CDD:380589 221/411 (54%)
7tmC_GABA-B-R1 588..860 CDD:320418 134/272 (49%)
TM helix 1 588..613 CDD:320418 7/24 (29%)
TM helix 2 625..646 CDD:320418 5/20 (25%)
TM helix 3 662..686 CDD:320418 15/23 (65%)
TM helix 4 708..728 CDD:320418 10/19 (53%)
TM helix 5 764..790 CDD:320418 16/25 (64%)
TM helix 6 799..822 CDD:320418 17/22 (77%)
TM helix 7 829..854 CDD:320418 12/24 (50%)
ERM_helical <883..>925 CDD:466641 18/57 (32%)
Blue background indicates that the domain is not in the aligned region.

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