DRSC/TRiP Functional Genomics Resources

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Protein Alignment GABA-B-R1 and Atp4b

DIOPT Version :9

Sequence 1:NP_001246033.1 Gene:GABA-B-R1 / 34878 FlyBaseID:FBgn0260446 Length:841 Species:Drosophila melanogaster
Sequence 2:NP_033854.1 Gene:Atp4b / 11945 MGIID:88114 Length:294 Species:Mus musculus


Alignment Length:194 Identity:39/194 - (20%)
Similarity:74/194 - (38%) Gaps:39/194 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   582 YTMVSGLLSIDLVILLSWQIFDPLQRYLETF--PLEDPVSTTDDIKIRPE--------LEHCESQ 636
            |.:::||.::.:.:|:  |..||   |...:  .|:.|     .:.:||:        :.:..|:
Mouse    48 YVVMTGLFALCIYVLM--QTIDP---YTPDYQDQLKSP-----GVTLRPDVYGERGLKISYNVSE 102

  Fly   637 RNSMWLGLVYGFKGLILVFGLFLAYETRSIKVKQIN--DSRYVGMSIY----NVVVLCLITAPVG 695
             ||.|.||.:....       |||..|.:.:...||  ..:|.....:    :....|..||.:.
Mouse   103 -NSSWAGLTHTLHS-------FLAGYTPASQQDSINCTSEKYFFQESFAAPNHTKFSCKFTADML 159

  Fly   696 MVIASQQDASFAFVALAVIFCCFLSMLLIFVPKVIEVIRHPKDKAESKYNPDSAISKEDEERYQ 759
            ...:...|.||.|......|...::.::.|:|.     .:...:.:..:..|....::|.|..|
Mouse   160 QNCSGLADPSFGFEEGKPCFIIKMNRIVKFLPS-----NNTAPRVDCTFQDDPQKPRKDTEPLQ 218

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GABA-B-R1NP_001246033.1 PBP1_GABAb_receptor 34..437 CDD:107361
ANF_receptor 52..415 CDD:279440
7tm_3 476..730 CDD:278433 35/163 (21%)
Atp4bNP_033854.1 Na_K_ATPase_bet 2..294 CDD:273446 39/194 (20%)
immunoglobulin-like. /evidence=ECO:0000250 194..294 4/25 (16%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3927
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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