DRSC/TRiP Functional Genomics Resources

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Protein Alignment GABA-B-R1 and Atp1b2

DIOPT Version :9

Sequence 1:NP_001246033.1 Gene:GABA-B-R1 / 34878 FlyBaseID:FBgn0260446 Length:841 Species:Drosophila melanogaster
Sequence 2:NP_038201.1 Gene:Atp1b2 / 11932 MGIID:88109 Length:290 Species:Mus musculus


Alignment Length:87 Identity:17/87 - (19%)
Similarity:33/87 - (37%) Gaps:25/87 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   558 VW--RVHRFTTKAKTDPKKKVEPWK--------LYTMVSGLLSIDLVILLSWQIFDPLQRYLETF 612
            ||  |.|:|..:..|.       |.        .|..::.:.|:.:.::|. .:.|...:|.:..
Mouse    21 VWNPRTHQFMGRTGTS-------WAFILLFYLVFYGFLTAMFSLTMWVMLQ-TVSDHTPKYQDRL 77

  Fly   613 PLEDPVSTTDDIKIRPELEHCE 634
                   .|..:.|||:.|:.:
Mouse    78 -------ATPGLMIRPKTENLD 92

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GABA-B-R1NP_001246033.1 PBP1_GABAb_receptor 34..437 CDD:107361
ANF_receptor 52..415 CDD:279440
7tm_3 476..730 CDD:278433 17/87 (20%)
Atp1b2NP_038201.1 Na_K_ATPase_bet 2..289 CDD:273446 17/87 (20%)
immunoglobulin-like. /evidence=ECO:0000250 193..290
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3927
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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