DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GABA-B-R1 and gabbr1

DIOPT Version :10

Sequence 1:NP_523569.3 Gene:GABA-B-R1 / 34878 FlyBaseID:FBgn0260446 Length:841 Species:Drosophila melanogaster
Sequence 2:XP_012823396.1 Gene:gabbr1 / 100135080 XenbaseID:XB-GENE-956617 Length:987 Species:Xenopus tropicalis


Alignment Length:818 Identity:406/818 - (49%)
Similarity:559/818 - (68%) Gaps:32/818 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 LCLIASP--HLQGGVAGRPDELHIGGIFPIAGKGGWQGGQACMPAARLALDDVNKQPNLLPGFKL 76
            :|.:..|  .::...:.|...||:|.:||::  |||.|||||.|||::||:|||.:.::||.::|
 Frog   154 ICQVRRPDTSIRHPESSRKRALHVGALFPMS--GGWPGGQACQPAAQMALEDVNNRRDILPEYEL 216

  Fly    77 ILHSNDSECEPGLGASVMYNLLYNKPQKLMLLAGCSTVCTTVAEAAKMWNLIVLCYGASSPALSD 141
            .|..:||:|:||.....:|.||||.|.|:||:.|||:|.|.|||||:||:||||.||:||||||:
 Frog   217 RLIHHDSQCDPGQATRYLYELLYNDPIKIMLMPGCSSVSTLVAEAARMWHLIVLSYGSSSPALSN 281

  Fly   142 RKRFPTLFRTHPSATVHNPTRIKLMKKFGWSRVAILQQAEEVFISTVEDLENRCMEAGVEIVTRQ 206
            |:||||.||||||||:|||||::|.||:||:::|.:||..|||.||::|||.|..|||:||..||
 Frog   282 RQRFPTFFRTHPSATLHNPTRVQLFKKWGWTKIATIQQTTEVFTSTLDDLEERVKEAGIEITFRQ 346

  Fly   207 SFLSDPTDAVRNLRRQDARIIVGLFYVVAARRVLCEMYKQQLYGRAHVWFFIGWYEDNWYEVNLK 271
            ||.|||...|:||:|||||:||||||...||:|.||:||::|:|:.:|||.||||.|||:::...
 Frog   347 SFFSDPAIPVKNLKRQDARVIVGLFYETEARKVFCEVYKERLFGKKYVWFLIGWYADNWFKIPDP 411

  Fly   272 AEGITCTVEQMRIAAEGHLTTEALMWNQNNQTTISGMTAEEFRHRLNQALIEEGYDINHDRYPE- 335
            |  |.||||:|..|.|||:|||.:|.|..|...||.||::||..:|.:.|.|.         || 
 Frog   412 A--INCTVEEMTQAVEGHVTTEIVMLNPENTRGISNMTSQEFMEKLKKRLGEN---------PEM 465

  Fly   336 --GYQEAPLAYDAVWSVALAFNKTMERLTTGKKSLRDFTYTDKEIADEIYAAMNSTQFLGVSGVV 398
              |.|||||||||:|::|||.|||...|:...:.|.||.|.:|.|::|||.||||:.|.||||.|
 Frog   466 TGGLQEAPLAYDAIWALALALNKTAYELSKKGRRLEDFNYNNKMISEEIYRAMNSSSFDGVSGHV 530

  Fly   399 AFSSQGDRIALTQIEQMIDGKYEKLGYYDTQLDNLSWLNTEQWIGGKVPQDRTIVTHVLRTVSLP 463
            .|.:.|.|:|.|.|||:..|.|:|:||||:..|||||.|.::||||..|.|.|.|....|.||..
 Frog   531 VFDASGSRMAWTLIEQLQGGVYKKIGYYDSTKDNLSWYNNDKWIGGSPPADHTKVIITFRYVSQK 595

  Fly   464 LFVCMCTISSCGIFVAFALIIFNIWNKHRRVIQSSHPVCNTIMLFGVIICLISVILLGIDGRFVS 528
            ||:.:..::..||.:.|..:.|||:|.|.|.||:|.|..|.:...|.|:.|.:|..||:|||.:.
 Frog   596 LFISVSVLAGLGILLGFVCLSFNIYNSHVRYIQNSQPHLNDVTAAGCILSLAAVFPLGLDGRHIE 660

  Fly   529 PEEYPKICQARAWLLSTGFTLAYGAMFSKVWRVHRFTTKAKTDPKKK------VEPWKLYTMVSG 587
            ...:|.:||||.|||..||:||||:||:|:|.:|...|| |.|.|::      :|||||||.||.
 Frog   661 TWHFPLVCQARLWLLGLGFSLAYGSMFTKIWWIHTAFTK-KDDKKERRKQSQTLEPWKLYTTVSL 724

  Fly   588 LLSIDLVILLSWQIFDPLQRYLETFPLEDPVSTTDDIKIRPELEHCESQRNSMWLGLVYGFKGLI 652
            ||.:|::.|..|||.|||||.:|.|..|:|.... |:.|.|:||||.|.:.:.|||:|||.|||:
 Frog   725 LLGLDVITLGIWQIVDPLQRSIEEFTKEEPRGDL-DVLILPQLEHCSSLKMNTWLGIVYGSKGLL 788

  Fly   653 LVFGLFLAYETRSIKVKQINDSRYVGMSIYNVVVLCLITAPVGMVIASQQDASFAFVALAVIFCC 717
            |:.|:||||||:|:..::|||.|.|||:||||.|||||||||.|:::|||||||||.:||::|..
 Frog   789 LLLGIFLAYETKSVSTEKINDHRAVGMAIYNVAVLCLITAPVTMILSSQQDASFAFSSLAIVFSA 853

  Fly   718 FLSMLLIFVPKVIEVIRHPKDKAESK--YNPDSAISKEDEERYQKLVTENEELQRLITQKEEKIR 780
            :::::::||||:..:|...:.::|.:  ....|:.:..:||:.:.|..||:||.|:|.:|||::.
 Frog   854 YITLVVLFVPKMRRLITRGEWQSEQQDTLKTGSSTNNNEEEKSRLLERENQELGRIIAEKEERVM 918

  Fly   781 VLRQRLVERG----DAKGTELNGATGVASAAVATTSQP 814
            .|||:|..|.    .|:....:.....:|.||::..||
 Frog   919 ELRQQLRSRRRPSVPARDNCSDNHFPNSSGAVSSLYQP 956

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GABA-B-R1NP_523569.3 PBP1_GABAb_receptor 34..443 CDD:380589 229/411 (56%)
7tmC_GABA-B-R1 463..734 CDD:320418 137/276 (50%)
TM helix 1 463..488 CDD:320418 7/24 (29%)
TM helix 2 500..521 CDD:320418 6/20 (30%)
TM helix 3 537..561 CDD:320418 16/23 (70%)
TM helix 4 581..601 CDD:320418 10/19 (53%)
TM helix 5 638..664 CDD:320418 16/25 (64%)
TM helix 6 673..696 CDD:320418 18/22 (82%)
TM helix 7 703..728 CDD:320418 11/24 (46%)
gabbr1XP_012823396.1 CCP 104..156 CDD:153056 0/1 (0%)
PBP1_GABAb_receptor 176..575 CDD:380589 229/411 (56%)
7tmC_GABA-B-R1 595..870 CDD:320418 137/276 (50%)
TM helix 1 595..620 CDD:320418 7/24 (29%)
TM helix 2 632..653 CDD:320418 6/20 (30%)
TM helix 3 669..693 CDD:320418 16/23 (70%)
TM helix 4 718..738 CDD:320418 10/19 (53%)
TM helix 5 774..800 CDD:320418 16/25 (64%)
TM helix 6 809..832 CDD:320418 18/22 (82%)
TM helix 7 839..864 CDD:320418 11/24 (46%)

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