DRSC/TRiP Functional Genomics Resources

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Protein Alignment NC2beta and Pole3

DIOPT Version :10

Sequence 1:NP_609736.1 Gene:NC2beta / 34875 FlyBaseID:FBgn0028926 Length:183 Species:Drosophila melanogaster
Sequence 2:NP_067473.2 Gene:Pole3 / 59001 MGIID:1933378 Length:145 Species:Mus musculus


Alignment Length:168 Identity:43/168 - (25%)
Similarity:74/168 - (44%) Gaps:33/168 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 DELTLPRASINKIIKELVPT-VRVANESRELILNCCSEFIHLISSEANEVCNMRNKKTINAEHVL 79
            ::|.||.|.|.:||||.:|. |.::.|:|..|....|.|:...:|.||.......:||:||..||
Mouse     6 EDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLNASDVL 70

  Fly    80 EALERLGFHDYKQEAEAVLHDCKEVAAKRRRQSTRLENLGIPEEELLRQQQELFAKAREEQAREE 144
            .|:|.:.|..:....:..|.      |.||.|..:.|.....:::..::..|...|:|||:..:|
Mouse    71 SAMEEMEFQRFITPLKEALE------AYRREQKGKKEASEQKKKDKDKKDSEEQDKSREEEEEDE 129

  Fly   145 QQQWMSMQAAAMVQRPPLADGSVASKPSEDDDDDDDDD 182
            ::.                          |:||.::::
Mouse   130 ERL--------------------------DEDDQNEEE 141

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NC2betaNP_609736.1 HFD_Dr1 15..135 CDD:467030 35/119 (29%)
Pole3NP_067473.2 HFD_POLE3_DPB4 6..92 CDD:467053 29/91 (32%)

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