DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GEN1 and Fen1

DIOPT Version :10

Sequence 1:NP_872431.5 Gene:GEN1 / 348654 HGNCID:26881 Length:908 Species:Homo sapiens
Sequence 2:NP_523765.1 Gene:Fen1 / 36887 FlyBaseID:FBgn0025832 Length:385 Species:Drosophila melanogaster


Alignment Length:356 Identity:86/356 - (24%)
Similarity:153/356 - (42%) Gaps:70/356 - (19%)


- Green bases have known domain annotations that are detailed below.


Human     1 MGVNDLWQILEP-VKQHIPLRNLGGKTIAVDLSLWVCEAQTVKKMMGSVM-------KPHLRNLF 57
            :|::.|...|.| ..:...:::..|:.:|:|.|:.:.:.....:..|:.:       ..||..:|
  Fly     4 LGLSKLIADLAPQAIRESEMKHFFGRKVAIDASMCLYQFLIAVRSEGAQLATVNGDPTSHLMGMF 68

Human    58 FRISYLTQMDVKLVFVMEGEPPKLKADVISKRNQSRYGSSGKSWSQKT------GRSHF------ 110
            :|...|....:|.|:|.:|:||.||:..::||.:.| ..:.|:....|      |...|      
  Fly    69 YRTIRLLDNGIKPVYVFDGKPPDLKSGELAKRAERR-EEAEKALKAATDAGDDAGIEKFNRRLVR 132

Human   111 --KSVLRECLHMLECLGIPWVQAAGEAEAMCAYLNAGGHVDGCLTNDGDTFLYGAQTVYRNFTMN 173
              |...:|...:|..:|:|:|.|..||||.||.|...|.|....|.|.|...:|:..:.|..|.:
  Fly   133 VTKEHAKEAKELLTLMGVPYVDAPCEAEAQCAALVKAGKVYATATEDMDALTFGSTKLLRYLTYS 197

Human   174 --TKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQILKG-QSLL 235
              .|.| |..::...:...|.::....:.|.|||||||. :.:.|:|.::|::||...:. :::|
  Fly   198 EARKMP-VKEFSYDKLLEGLAINNREFIDLCILLGCDYC-ESIKGIGPKRAIELINTYRDIETIL 260

Human   236 QRFN--------RWNETSCNSSPQLLVTKKLAHCSVCSHPGSPKDHERNGCRLCKSDKYCEPHD- 291
            ...:        .||   ...:.:|.:..::|              :.:...|    |:.||.: 
  Fly   261 DNLDSSKYTVPENWN---YKVARELFIEPEVA--------------DADSIDL----KWVEPDEE 304

Human   292 --YEYCCPCEWHRTEHDRQLSE--VENNIKK 318
              .::.|        .|||.:|  |.|..||
  Fly   305 GLVKFLC--------GDRQFNEERVRNGAKK 327

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GEN1NP_872431.5 PIN_GEN1 2..206 CDD:350217 58/227 (26%)
XPG-N domain. /evidence=ECO:0000269|PubMed:26682650 2..96 25/101 (25%)
XPG-I domain. /evidence=ECO:0000269|PubMed:26682650 122..208 28/87 (32%)
H3TH_GEN1 195..338 CDD:188625 31/138 (22%)
5'-3' exonuclease domain. /evidence=ECO:0000269|PubMed:26682650 208..384 25/125 (20%)
Chromodomain. /evidence=ECO:0000269|PubMed:26682650 390..464
Chromo_2 398..458 CDD:465841
Fen1NP_523765.1 PTZ00217 1..363 CDD:240317 86/356 (24%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.