DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG15279 and slc6a1a

DIOPT Version :9

Sequence 1:NP_609726.1 Gene:CG15279 / 34863 FlyBaseID:FBgn0028886 Length:639 Species:Drosophila melanogaster
Sequence 2:NP_001038752.2 Gene:slc6a1a / 692318 ZFINID:ZDB-GENE-060519-23 Length:679 Species:Danio rerio


Alignment Length:629 Identity:223/629 - (35%)
Similarity:341/629 - (54%) Gaps:52/629 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 DGRSTASTVEISTN-SPALRDNSDDQEAAKVPEERATWGKGVEFLMSCIAMSVGLGNVWRFPFTA 80
            ||:......||:|| .|...|...::....:| :|.|||...:||:||:..::|||||||||:..
Zfish    10 DGQVVTELNEITTNDKPKTEDAKPEKNKKDIP-DRETWGGKFDFLLSCVGYAIGLGNVWRFPYLC 73

  Fly    81 LDNGGGAFLIPYLIVLFLIGKPIYYLEMVIGQFSSRGSVKVFDLCPAMKGVGAGQAFQVFMLSTY 145
            ..||||||||||.:.|...|.|:::||..:||::|.|.:.|:.|.|..||||...|...|.|:.|
Zfish    74 GKNGGGAFLIPYFLTLIFAGVPLFFLECALGQYTSIGGLGVWKLAPMFKGVGLAAAVLSFWLNIY 138

  Fly   146 YAALVAIIGRYFIESFRNPLPWSTCRAEWGIHCINSAPDASNWSQLESNDQRPQNYTMKSQNDRV 210
            |..::|....|...||...|||.:|...|                  :.|:...||::....:  
Zfish   139 YIVIIAWALYYLYNSFTTDLPWKSCNNPW------------------NTDRCYTNYSIVDTTN-- 183

  Fly   211 ITSSEWYFVKEVLH------EKPNIEEGIGLPNWELVIGLFIAWSCVFFIIRRGVKSSGKASYFL 269
            :||:...|.:..:|      |||.   .|.:|   |.|.|.|||..|:|.|.:||..:||..||.
Zfish   184 LTSAVMEFWERNVHQMTDGLEKPG---EIRVP---LAITLAIAWVLVYFCIWKGVSWTGKVVYFS 242

  Fly   270 ALFPYVIMGVLLVRAVTLPGSIDGIYYFIKPQWGKILDPKVWYAAVTQCFYSLSVCFGNIIMYSS 334
            |.:||.::.:|.:|.|||||:.:||.::|.|.:.|:.:.:||..|.||.|:|..:..|::|...|
Zfish   243 ATYPYFMLFILFIRGVTLPGAKEGILFYITPDFEKLKESEVWLDAATQIFFSYGLGLGSLIALGS 307

  Fly   335 FNKFGHNVHRDAAIVTGLDTMTSLLAGFTIFGILGHLAHEIGTDDIGSVVKGGAGLAFISYPDAI 399
            :|.|.:||:||:.||..:::.||:.|||.||.|:|.::| :....|..|...|.||||::||:|:
Zfish   308 YNPFNNNVYRDSIIVCCINSFTSMFAGFVIFSIVGFMSH-VTKRPIADVAASGPGLAFLAYPEAV 371

  Fly   400 AKFKNLPQIFSVLFFLMLFVLGIGSNIAMTSCSVTAIRDRFPNFGQWQCSLLIA---VVSFFIGL 461
            .:....| ::::|||.||.:|||.|........:||:.|.||...:.:..:.||   |||:.|||
Zfish   372 TQLPVSP-LWAILFFSMLLMLGIDSQFCTVEGFITALVDEFPRLLRKRREIFIACVCVVSYAIGL 435

  Fly   462 MYITPGGQYMLTLVDFFGAS-MIALVLGIAELYTIGWIYGTDRLCKDIEFMLGRKVGLYWRLCWS 525
            ..||.||.|:..|.|::.|| |..|.|...|..:|.|.||.::...:|:.|:|.|..::|:|||.
Zfish   436 SNITQGGLYVFKLFDYYSASGMCLLFLVFFECISISWCYGVNKFYDNIQEMIGYKPCIWWKLCWV 500

  Fly   526 IITPLIMTVILIYFYATYQPLTYNNIVYPNWSYSIGWLITAFGILQLPIWMIVAIVRDPGQTLGA 590
            ..|||::..:.::......|||.||.|:|.|...:|||:....::.:|.:|....:...| |...
Zfish   501 FFTPLVVAGVFLFSAVQMVPLTMNNYVFPKWGQGVGWLMALSSMVLIPGYMGYMFLNLKG-TYKE 564

  Fly   591 KIRGAFTP------KKNWGP----SDPLLREQYHKEIENELTPK 624
            :||....|      ::| ||    |.|.::||..::.::...|:
Zfish   565 RIRIMLQPPAVKRAQEN-GPEQQQSQPPIQEQSPQQPQSPQQPQ 607

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG15279NP_609726.1 SLC5-6-like_sbd 50..598 CDD:294310 205/557 (37%)
slc6a1aNP_001038752.2 SLC5-6-like_sbd 2..588 CDD:294310 218/608 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.920

Return to query results.
Submit another query.