DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG15279 and slc6a4b

DIOPT Version :9

Sequence 1:NP_609726.1 Gene:CG15279 / 34863 FlyBaseID:FBgn0028886 Length:639 Species:Drosophila melanogaster
Sequence 2:NP_001170930.1 Gene:slc6a4b / 664770 ZFINID:ZDB-GENE-060314-2 Length:591 Species:Danio rerio


Alignment Length:561 Identity:191/561 - (34%)
Similarity:315/561 - (56%) Gaps:39/561 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 EERATWGKGVEFLMSCIAMSVGLGNVWRFPFTALDNGGGAFLIPYLIVLFLIGKPIYYLEMVIGQ 112
            |.|..|.|.::||:|.|..:|.||||||||:....||||||||||:::....|.|::|:|:.:||
Zfish    36 ESRDKWSKKMDFLLSVIGFAVDLGNVWRFPYICYQNGGGAFLIPYVLMAVFGGVPLFYMELALGQ 100

  Fly   113 FSSRGSVKVF-DLCPAMKGVGAGQAFQVFMLSTYYAALVAIIGRYFIESFRNPLPWSTCRAEWGI 176
            |...|::.:: .:||..||:|.........:|.||..::|....||..||.:.|||::|..:|..
Zfish   101 FHRTGAISIWKHICPIFKGIGFAICIIALYVSFYYNTIIAWALFYFYSSFSSTLPWTSCDNDWNT 165

  Fly   177 -HCIN-SAPDASNWSQLESNDQRPQNYTMKSQNDRVITSSEWYFVKEVL--HEKPNIEEGIGLPN 237
             :|.| ...|...|:          ||:.        :.:|.::.:.||  ||...: ..:|...
Zfish   166 ENCTNYFGKDNVTWT----------NYSR--------SPAEEFYTRNVLAVHESSGL-GNVGYIR 211

  Fly   238 WELVIGLFIAWSCVFFIIRRGVKSSGKASYFLALFPYVIMGVLLVRAVTLPGSIDGIYYFIKPQW 302
            |:|::.||:.::.|:|.:.:|||:|||..:..|..|||::.:|::|..||||:..|:.:::.|:|
Zfish   212 WQLMLCLFLIFTIVYFSLWKGVKTSGKVVWVTATLPYVVLLILMIRGATLPGAWKGVVFYLNPKW 276

  Fly   303 GKILDPKVWYAAVTQCFYSLSVCFGNIIMYSSFNKFGHNVHRDAAIVTGLDTMTSLLAGFTIFGI 367
            .|:.:..||..|..|.|:||...||.::..||:|.|.:|.:|||.:.:.::.:||.::||.||.:
Zfish   277 EKLKETSVWVDAAAQIFFSLGPGFGVLLALSSYNPFTNNCYRDAIVTSLVNCLTSFVSGFVIFTV 341

  Fly   368 LGHLAHE--IGTDDIGSVVKGGAGLAFISYPDAIAKFKNLPQIFSVLFFLMLFVLGIGSNIAMTS 430
            ||::|.:  :..:|:..  ..|..|.||:||:|||.... ...|:::||:|:..||:.|......
Zfish   342 LGYMAEQRNVNVEDVAR--DKGPSLLFITYPEAIANMVG-STFFAIIFFVMMITLGLDSTFGGLE 403

  Fly   431 CSVTAIRDRFPNFGQWQCSLLI---AVVSFFIGLMYITPGGQYMLTLVDFF--GASMIALVLGIA 490
            ..:||:.|.:|:....:..|.:   .||.|...|..:|.||.|::.|::.|  |:|:||:|  ..
Zfish   404 AIITAVMDEYPDVLSHRRELFVLGLVVVCFLGSLSTLTKGGAYVVKLLEEFGVGSSIIAIV--FL 466

  Fly   491 ELYTIGWIYGTDRLCKDIEFMLGRKVGLYWRLCWSIITPLIMTVILIYFYATYQPLTYNNIVYPN 555
            |...:.|.||.:|...||:.|||...||:|::||..|:|..:..|:|......|.||..:..:|:
Zfish   467 EATAVSWFYGINRFSNDIKSMLGYTPGLFWKVCWVAISPAFLAYIIISSLLNPQTLTLFDYEFPD 531

  Fly   556 WSYSIGWLITAFGILQLPIWMIVAIVRDPG---QTLGAKIR 593
            ||.::|::|.|...:.:||:|:..:|..||   |.|...:|
Zfish   532 WSITVGYIIGASSFIWIPIYMVYKLVWTPGSLKQRLAVCLR 572

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG15279NP_609726.1 SLC5-6-like_sbd 50..598 CDD:294310 190/559 (34%)
slc6a4bNP_001170930.1 SLC6sbd_SERT 38..574 CDD:271399 190/559 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.820

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