DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG15279 and Slc6a17

DIOPT Version :9

Sequence 1:NP_609726.1 Gene:CG15279 / 34863 FlyBaseID:FBgn0028886 Length:639 Species:Drosophila melanogaster
Sequence 2:NP_001028251.1 Gene:Slc6a17 / 613226 RGDID:1587185 Length:727 Species:Rattus norvegicus


Alignment Length:690 Identity:208/690 - (30%)
Similarity:331/690 - (47%) Gaps:141/690 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 TQRNHQNLAFVGDDGRSTASTVEISTNSPALRDNSDDQEAA-----------KVPEE------RA 51
            |||.|.|       ...|.|..::.    ||.:..|.:::.           ||.||      |.
  Rat     8 TQREHSN-------EHVTESVADLL----ALEEPVDYKQSVLNVAGETGGKQKVAEEELDAEDRP 61

  Fly    52 TWGKGVEFLMSCIAMSVGLGNVWRFPFTALDNGGGAFLIPYLIVLFLIGKPIYYLEMVIGQFSSR 116
            .|...::::::.|..||||||:||||:....|||||:|:|||::|.:||.|:::||:.:||...|
  Rat    62 AWNSKLQYILAQIGFSVGLGNIWRFPYLCQKNGGGAYLVPYLVLLIIIGIPLFFLELAVGQRIRR 126

  Fly   117 GSVKVFD-LCPAMKGVGAGQAFQVFMLSTYYAALVAIIGRYFIESFRNPLPWSTCRAEWGIHCIN 180
            ||:.|:. :||.:.|:|.........:..||..::.....||.:||:.|||||.|..      |.
  Rat   127 GSIGVWHYVCPRLGGIGFSSCIVCLFVGLYYNVIIGWSVFYFFKSFQYPLPWSECPV------IR 185

  Fly   181 SAPDASNWSQLESNDQRPQNYTMKSQNDRVITSSEWYFVKEVLHEKPNIEEGIGLPNWELVIGLF 245
            :...|....:.|.:.               .|:..||  :|.|....:|.|..|| ||::.:.|.
  Rat   186 NGTVAVVEPECEKSS---------------ATTYFWY--REALDISNSISESGGL-NWKMTVCLL 232

  Fly   246 IAWSCVFFIIRRGVKSSGKASYFLALFPYVIMGVLLVRAVTLPGSIDGIYYFIKPQWGKILDPKV 310
            :|||.|...:.:|::||||..||.:|||||::...|||.:.|.|::|||.:...|:..|:|||:|
  Rat   233 VAWSIVGMAVVKGIQSSGKVMYFSSLFPYVVLACFLVRGLLLRGAVDGILHMFTPKLDKMLDPQV 297

  Fly   311 WYAAVTQCFYSLSVCFGNIIMYSSFNKFGHNVHRDAAIVTGLDTMTSLLAGFTIFGILG------ 369
            |..|.||.|::|.:.||.:|.:||:||..:|.|.|||:|:.::..||:||...:|.:||      
  Rat   298 WREAATQVFFALGLGFGGVIAFSSYNKQDNNCHFDAALVSFINFFTSVLATLVVFAVLGFKANIM 362

  Fly   370 ---------------------------------HLAHE-------------------IG------ 376
                                             ||..:                   :|      
  Rat   363 NEKCVVENAEKILGYLNSNVLSRDLIPPHVNFSHLTTKDYSEMYNVIMTVKEKQFSALGLDPCLL 427

  Fly   377 TDDIGSVVKGGAGLAFISYPDAIAKFKNLPQIFSVLFFLMLFVLGIGSNIAMTSCSVTAIRDRFP 441
            .|::...|: |.|||||::.:|:..|...| .:||:|||||..||:||.|...:...|.|.|.| 
  Rat   428 EDELDKSVQ-GTGLAFIAFTEAMTHFPASP-FWSVMFFLMLINLGLGSMIGTMAGITTPIIDTF- 489

  Fly   442 NFGQWQCSLLIAVVSFFIGLMYITPGGQYMLTLVDFFGASMIALVLGIAELYTIGWIYGTDRLCK 506
            ...:...::...|.:||:||:::...|.|.:|:.|.:.|::...|:.|.|...:.|||||.:..:
  Rat   490 KVPKEMFTVGCCVFAFFVGLLFVQRSGNYFVTMFDDYSATLPLTVIVILENIAVAWIYGTKKFMQ 554

  Fly   507 DIEFMLGRKVGLYWRLCWSIITPLIMTVI----LIYF------YATY--QPLTYNNIVYPNWSYS 559
            ::..|||.:...::...|..::||.|.|:    :|..      |:.:  :......:.:|||:.:
  Rat   555 ELTEMLGFRPYRFYFYMWKFVSPLCMAVLTTASIIQLGVSPPGYSAWIKEEAAERYLYFPNWAMA 619

  Fly   560 IGWLITAFGILQLPIWMIVAIVR------DPGQTLGAKIR 593
            :  |||...:..||| .:|.|:|      |...||....:
  Rat   620 L--LITLIAVATLPI-PVVFILRHFHLLSDGSNTLSVSYK 656

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG15279NP_609726.1 SLC5-6-like_sbd 50..598 CDD:294310 194/627 (31%)
Slc6a17NP_001028251.1 SLC6sbd_NTT4 60..648 CDD:271403 192/617 (31%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 680..727
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

Return to query results.
Submit another query.