DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG15279 and snf-12

DIOPT Version :9

Sequence 1:NP_609726.1 Gene:CG15279 / 34863 FlyBaseID:FBgn0028886 Length:639 Species:Drosophila melanogaster
Sequence 2:NP_509527.1 Gene:snf-12 / 181143 WormBaseID:WBGene00004911 Length:1022 Species:Caenorhabditis elegans


Alignment Length:620 Identity:160/620 - (25%)
Similarity:282/620 - (45%) Gaps:83/620 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 TVEISTNSPALRDNSD------DQ----------EAAKVPEERATWGKGVEFLMSCIAMSVGLGN 72
            |:::|    ||.|.:.      ||          ..:|..:.|..|....:|.:||:...||:|:
 Worm   119 TIDVS----ALEDQTPQRPHWWDQFQLYRRTDLLRFSKQNDRRELWRTQKDFFLSCLGFMVGVGH 179

  Fly    73 VWRFPFTALDNGGGAFLIPYLIVLFLIGKPIYYLEMVIGQFSSRGSVKVFD-LCPAMKGVGAGQA 136
            ..|||.....:|||.|.||||..|...|.|:.:|.:.:||::.:.:...|. |.|...|||....
 Worm   180 TMRFPAKVYQHGGGVFFIPYLFSLIFFGLPLVFLHLSLGQYTGQAANTAFQRLMPIGSGVGWALV 244

  Fly   137 FQVFMLSTYYAALVAIIGRYFIESFR-----NPLPWSTCRAEW-------GIHCINSAPDASNWS 189
            .....::.||..:||....||.:|.:     :.|||.|||.||       .:|.::|..:::|  
 Worm   245 VIAIPVAVYYNIIVAWAIHYFFQSAKGLLLGDELPWETCRDEWQLDNRCCNLHNLHSCFNSTN-- 307

  Fly   190 QLESNDQRPQNYTMKSQNDRVITSSEWYFVKEVLHEKPNIEEGIGLPNWELVIGLFIAWSCVFFI 254
                                .||:.|.:|..|||......:..:|.....||:.|..||..|||.
 Worm   308 --------------------SITAPEAFFHSEVLSLSTFGDFALGPLQSHLVLSLAAAWLLVFFG 352

  Fly   255 IRRGVKSSGKASYFLALFPYVIMGVLLVRAVTLPGSIDGIYYFIKPQWGKILDPKVWYAAVTQCF 319
            :.:|:.|..:.....|..||:::.:||:|.::|||:..|:.:.......|:...::|.:|..|.|
 Worm   353 VFKGLGSIAQTMNVTATVPYLLLSILLLRGISLPGANKGLTFLFTVDSTKLWKWQIWKSAAEQVF 417

  Fly   320 YSLSVCFGNIIMYSSFNKFGHNVHRDAAIVTGLDTMTSLLAGFTIFGILGHLAHEIGTDDIGSVV 384
            |.|.:..|.:|..::|:::.:|::||:.::..:|.:||.|:|..||..:|.:|.| ...::..|:
 Worm   418 YELGIDAGPLISMAAFSRYRNNIYRDSVLLVIMDALTSCLSGMVIFSFVGFIASE-SNSNVNDVL 481

  Fly   385 K-GGAGLAFISYPDAIAKFKNLPQIFSVLFFLMLFVLGIGSNIAMTSCSVTAIRDRFPNFGQWQC 448
            | ....|:|..|| .:..|.....:::.|||.||.:..|.:..|......:|..:.|....:...
 Worm   482 KHDPLYLSFTVYP-GVTSFMYWGGLWATLFFGMLVLAAIDAEFAWLEMIASAFMNHFSMKNKAVE 545

  Fly   449 SLLIA---VVSFFIGLMYITPGGQYMLTLVDFFGASMIALVLGIAELYTIGWIYGTDRLCKDIEF 510
            :.|:|   :..||:||.....||.::...::...|:..:..|.:..:..:.::||.|....||..
 Worm   546 NRLLAFLCLAGFFLGLPLCAQGGIFVFHAIENLNANWNSFSLALLSVAIVCYVYGIDNYLTDISA 610

  Fly   511 M-------------LGRKV-------GLYWRLCWSIITPLIMTVILIYFYATYQPLTYNNIVYPN 555
            |             |..|:       |:|.:.....|.|:|:||:|:.....||.:::.....|.
 Worm   611 MLRVPRIQISKATRLKEKLIYFFGPGGIYIKFSLCFICPVILTVLLVASVLGYQRISFAGRPIPI 675

  Fly   556 WSYSIGWLITAFGILQLPI--WMIVAIVRDPGQTL 588
            ....:.|::....:|.:|:  :|.:..:|:.|:.|
 Worm   676 DYEIVAWIVMIGPLLVVPLVAFMQIRQIRNEGKLL 710

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG15279NP_609726.1 SLC5-6-like_sbd 50..598 CDD:294310 152/578 (26%)
snf-12NP_509527.1 SLC6sbd 158..660 CDD:271359 141/525 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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