Protein Alignment CG4701 and YTA6

DIOPT Version :10

• Sequence 1: NP_609721.1
• Gene: CG4701 / 34858
• FlyBaseID: FBgn0028868
• Length: 384
• Species: Drosophila melanogaster
• Sequence 2: NP_015251.1
• Gene: YTA6 / 856031
• SGDID: S000005995
• Length: 754
• Species: Saccharomyces cerevisiae
• Alignment Length: 320
• Identity: 117/320 - (36%)
• Similarity: 170/320 - (53%)
• Gaps: 38/320 - (11%)

  Fly    57 LNSSAIGAAKKFRARDFNEHEMMIASHLVTPEDIDISWSDIAGLDGTIQELRETVVLPVRHRKLF 121
            |:|......|..:..|.|..|.::...|||.|  .:.|.|||||......|:|.||.|.....||
Yeast   435 LDSRKEDILKSVQGVDRNACEQILNEILVTDE--KVYWEDIAGLRNAKNSLKEAVVYPFLRPDLF 497

  Fly   122 SRSKLWRAP-KGVLLHGPPGCGKTLIAKAIAKDAGMRFINLDVGVLTDKWYGESQKLATAVFTLA 185
               |..|.| :|:||.||||.|||:||||:|.::...|.::....|..|:.|||:||..|:|.:|
Yeast   498 ---KGLREPVRGMLLFGPPGTGKTMIAKAVATESNSTFFSVSASSLLSKYLGESEKLVRALFYMA 559

  Fly   186 KKLQPCIIFIDEIESFLRMRGSNDHEATAMIKTQFMLQWDGLMSNT----------NICVLVLGA 240
            |||.|.|||||||:|.|..|..|::|::..|||:.::||..|.|.|          :..||||||
Yeast   560 KKLSPSIIFIDEIDSMLTARSDNENESSRRIKTELLIQWSSLSSATAQSEDRNNTLDSRVLVLGA 624

  Fly   241 TNRPQDLDKAILRRMPAQFHIGVPRDCQRR--EILQLILQTEQLSPSVNLKELARLTIGFSGSDL 303
            ||.|..:|.|..||...:.:|.:| |.:.|  .:.:|:.:.:.....::.:.:..:|.|||||||
Yeast   625 TNLPWAIDDAARRRFSRKLYIPLP-DYETRLYHLKRLMAKQKNSLQDLDYELITEMTEGFSGSDL 688

  Fly   304 RELCRHASMYRMRQFMREKLNTGEEIGKDKIEWDFEVKD--------------QALQEWE 349
            ..|.:.|:|..:|. :.:||...:   .|||. ..|:||              ::||::|
Yeast   689 TSLAKEAAMEPIRD-LGDKLMFAD---FDKIR-GIEIKDFQNALLTIKKSVSSESLQKYE 743

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG4701	NP_609721.1	CDC48	<21..368	CDD:273521	117/320 (37%)
		RecA-like_ATAD1	96..261	CDD:410928	78/175 (45%)
YTA6	NP_015251.1	PTZ00108	<158..412	CDD:240271
		RecA-like_VPS4-like	473..645	CDD:410917	77/174 (44%)
		AAA_lid_3	670..714	CDD:465537	14/47 (30%)
		Vps4_C	<718..750	CDD:462762	6/26 (23%)