DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4701 and PEX1

DIOPT Version :10

Sequence 1:NP_609721.1 Gene:CG4701 / 34858 FlyBaseID:FBgn0028868 Length:384 Species:Drosophila melanogaster
Sequence 2:NP_196464.2 Gene:PEX1 / 830746 AraportID:AT5G08470 Length:1130 Species:Arabidopsis thaliana


Alignment Length:239 Identity:80/239 - (33%)
Similarity:130/239 - (54%) Gaps:7/239 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    92 ISWSDIAGLDGTIQELRETVVLPVRHRKLFSRSKLWRAPKGVLLHGPPGCGKTLIAKAIAKDAGM 156
            :.|.|:.|:......::|.:.||.:..|:|::|.| |....|||:||||||||.|..|.|....:
plant   841 LGWEDVGGVTDIKNAIKEMIELPSKFPKIFAKSPL-RLRSNVLLYGPPGCGKTHIVGAAAAACSL 904

  Fly   157 RFINLDVGVLTDKWYGESQKLATAVFTLAKKLQPCIIFIDEIESFLRMRGSNDHEATAMIKTQFM 221
            |||::....|.:|:.|.|::....:|:.|....|||:|.||.:|....||.::...|..:..||:
plant   905 RFISVKGPELLNKYIGASEQAVRDIFSKAAAAAPCILFFDEFDSIAPKRGHDNTGVTDRVVNQFL 969

  Fly   222 LQWDGLMSNTNICVLVLGATNRPQDLDKAILR--RMPAQFHIGVPRDCQRREILQLILQTEQLSP 284
            .:.||:...|.  |.|..||:||..||.|:||  |:........|...:|.|||.::.:...::.
plant   970 TELDGVEVLTG--VFVFAATSRPDLLDPALLRPGRLDRLLLCDFPSPPERLEILTVLSRKLLMAD 1032

  Fly   285 SVNLKELARLTIGFSGSDLRELCRHASMYRMRQFM--REKLNTG 326
            .::|:.:|.:|.||||:||:.|...|.:..:.:::  .:|..||
plant  1033 DIDLEPIALMTEGFSGADLQALLSDAQLAAVHEYLNREDKPETG 1076

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4701NP_609721.1 CDC48 <21..368 CDD:273521 80/239 (33%)
RecA-like_ATAD1 96..261 CDD:410928 60/166 (36%)
PEX1NP_196464.2 PEX-1N 109..182 CDD:462729
CDC48 <585..1117 CDD:273521 80/239 (33%)
RecA-like_PEX1_r2 852..1009 CDD:410934 58/159 (36%)
Blue background indicates that the domain is not in the aligned region.

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