Protein Alignment CG4701 and nmd

DIOPT Version :10

• Sequence 1: NP_609721.1
• Gene: CG4701 / 34858
• FlyBaseID: FBgn0028868
• Length: 384
• Species: Drosophila melanogaster
• Sequence 2: NP_609373.1
• Gene: nmd / 44021
• FlyBaseID: FBgn0005322
• Length: 369
• Species: Drosophila melanogaster
• Alignment Length: 375
• Identity: 221/375 - (58%)
• Similarity: 285/375 - (76%)
• Gaps: 20/375 - (5%)

  Fly    10 QILAIVIRVCVFSALTYYTAKWMINALDPNNKIRGKAKYVAEEQLRKLNSSAIGAAKKFRARDFN 74
            ||..:::|:.|.|.:|||:.|||:|.:||.:|.:.|||.:|||||::|   |.....|.|.::|:
  Fly    15 QIFQVLVRLSVASLITYYSVKWMMNQMDPTSKNKKKAKVLAEEQLKRL---AEQEGFKLRGQEFS 76

  Fly    75 EHEMMIASHLVTPEDIDISWSDIAGLDGTIQELRETVVLPVRHRKLFSRSKLWRAPKGVLLHGPP 139
            ::|:|||||||.|.||.:||:||||||..||||||:||||::|:.||..||||:|||||||||||
  Fly    77 DYELMIASHLVVPADITVSWADIAGLDSVIQELRESVVLPIQHKDLFKHSKLWQAPKGVLLHGPP 141

  Fly   140 GCGKTLIAKAIAKDAGMRFINLDVGVLTDKWYGESQKLATAVFTLAKKLQPCIIFIDEIESFLRM 204
            ||||||||||.||:||||||||||.:||||||||||||.:|||:||.:::|||||||||:||||.
  Fly   142 GCGKTLIAKATAKEAGMRFINLDVAILTDKWYGESQKLTSAVFSLASRIEPCIIFIDEIDSFLRS 206

  Fly   205 RGSNDHEATAMIKTQFMLQWDGLMSNTNICVLVLGATNRPQDLDKAILRRMPAQFHIGVPRDCQR 269
            |..||||||||:|||||:.||||.:|.|..|:|:|||||||||||||:||||||||||:|.:.||
  Fly   207 RNMNDHEATAMMKTQFMMLWDGLSTNANSTVIVMGATNRPQDLDKAIVRRMPAQFHIGLPSETQR 271

  Fly   270 REILQLILQTEQLSPSVNLKELARLTIGFSGSDLRELCRHASMYRMRQFMREKLNTGEEIGKDKI 334
            ::||:||||:|::|..|:|..|::||.|||||||||:||:||:|||||.:..:..:...:.::.:
  Fly   272 KDILKLILQSEEVSQDVDLNRLSKLTNGFSGSDLREMCRNASVYRMRQLITSRDPSATALDRNNV 336

  Fly   335 EWDFEVKDQALQEWEHLEIQMEDLLKSLSVMKASKHQAQGTFLEKDLELD 384
                             .|.|:|||.|...:|.||......|||..:|||
  Fly   337 -----------------RITMDDLLGSHLKIKESKMHTSSLFLENRIELD 369

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG4701	NP_609721.1	CDC48	<21..368	CDD:273521	209/346 (60%)
		RecA-like_ATAD1	96..261	CDD:410928	128/164 (78%)
nmd	NP_609373.1	RecA-like_ATAD1	98..263	CDD:410928	128/164 (78%)
		AAA_lid_3	287..323	CDD:465537	23/35 (66%)