DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4701 and nvl

DIOPT Version :10

Sequence 1:NP_609721.1 Gene:CG4701 / 34858 FlyBaseID:FBgn0028868 Length:384 Species:Drosophila melanogaster
Sequence 2:NP_998649.1 Gene:nvl / 406805 ZFINID:ZDB-GENE-040426-2871 Length:796 Species:Danio rerio


Alignment Length:277 Identity:88/277 - (31%)
Similarity:142/277 - (51%) Gaps:24/277 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    91 DISWSDIAGLDGTIQELRETVVLPVRHRKLFSRSKLWRAPKGVLLHGPPGCGKTLIAKAIAKDAG 155
            |::|:|:..|....:||...::.|:::.:.|....| .||.|:||.|||||||||:|||:|..:|
Zfish   516 DVTWADVGALQDVREELHMAIMAPIQNPEQFKALGL-SAPAGLLLAGPPGCGKTLLAKAVANASG 579

  Fly   156 MRFINLDVGVLTDKWYGESQKLATAVFTLAKKLQPCIIFIDEIESFLRMRGSNDHEATAMIKTQF 220
            :.||::....|.:.:.|||::....||...:...||:||.|||::....|..::..|:..:..|.
Zfish   580 LNFISVKGPELLNMYVGESERAVRQVFQRGRNSAPCVIFFDEIDALCPRRSEHESGASVRVVNQL 644

  Fly   221 MLQWDGLMSNTNICVLVLGATNRPQDLDKAILR--RMPAQFHIGVPRDCQRREILQLILQ---TE 280
            :.:.||:.:...  |.::.|||||..:|.|:||  |:....::|:|....|..||..|.:   ..
Zfish   645 LTEMDGMENRRQ--VFIMAATNRPDIIDPAVLRPGRLDKTLYVGLPPAADRHAILNTITKGGTKP 707

  Fly   281 QLSPSVNLKELAR--LTIGFSGSDLRELCRHASMYRMRQFMREKLNTGEEIGKD----------- 332
            ||...|:|:|:|.  ....|:|:||..|.|.|.:..:|..: :...|..|..||           
Zfish   708 QLDSDVSLEEIAHDARCETFTGADLSALVREACVNALRVHL-DPAQTHTESAKDIRVSRVHFEDA 771

  Fly   333 --KIEWDFEVKDQALQE 347
              |:......|||.:.|
Zfish   772 FKKVRPSVSKKDQLMYE 788

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4701NP_609721.1 CDC48 <21..368 CDD:273521 88/277 (32%)
RecA-like_ATAD1 96..261 CDD:410928 57/166 (34%)
nvlNP_998649.1 Nucleolin_bd 2..71 CDD:465247
CDC48 <218..796 CDD:273521 88/277 (32%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.