Protein Alignment CG4701 and Katna1

DIOPT Version :10

• Sequence 1: NP_609721.1
• Gene: CG4701 / 34858
• FlyBaseID: FBgn0028868
• Length: 384
• Species: Drosophila melanogaster
• Sequence 2: NP_001004217.2
• Gene: Katna1 / 292464
• RGDID: 1303062
• Length: 493
• Species: Rattus norvegicus
• Alignment Length: 343
• Identity: 118/343 - (34%)
• Similarity: 185/343 - (53%)
• Gaps: 35/343 - (10%)

  Fly    43 RGKAKYVAE--------EQLRKLNSSAI-GAAKKFRARDFNEHEMMIASHLVTPEDIDISWSDIA 98
            ||||....|        |:..||.::.. ..|.||.:..:::..:......:..::.::.|.|||
  Rat   150 RGKAVRSREKKEQSKGREEKNKLPAAVTEPEANKFDSTGYDKDLVEALERDIISQNPNVRWYDIA 214

  Fly    99 GLDGTIQELRETVVLPVRHRKLFSRSKLWRAP-KGVLLHGPPGCGKTLIAKAIAKDAGMRFINLD 162
            .|....:.|:|.||||:...:.|   |..|.| ||||:.||||.||||:|||:|.:....|.|:.
  Rat   215 DLVEAKKLLQEAVVLPMWMPEFF---KGIRRPWKGVLMVGPPGTGKTLLAKAVATECKTTFFNVS 276

  Fly   163 VGVLTDKWYGESQKLATAVFTLAKKLQPCIIFIDEIESFLRMRG-SNDHEATAMIKTQFMLQWDG 226
            ...||.|:.|||:||...:|.:|:...|..||||||:|....|| |.:|||:..:|.:.::|.||
  Rat   277 SSTLTSKYRGESEKLVRLLFEMARFYSPATIFIDEIDSICSRRGTSEEHEASRRVKAELLVQMDG 341

  Fly   227 L-----MSNTNICVLVLGATNRPQDLDKAILRRMPAQFHIGVPRDCQRREILQLILQTEQLSPSV 286
            :     ..:.:..|:||.|||.|.|:|:|:.||:..:.:|.:|....|.|:|::.|:..:|:..|
  Rat   342 VGGASENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGREELLRISLRELELADDV 406

  Fly   287 NLKELARLTIGFSGSDLRELCRHASMYRMRQFMREKLNTGEEIGKDKIEWDFEVKDQALQEWEHL 351
            ||..:|....|:||:|:..:||.||:..||:  |.:..|.|||           ::.:.:|. |:
  Rat   407 NLASIAENMEGYSGADITNVCRDASLMAMRR--RIEGLTPEEI-----------RNLSREEM-HM 457

  Fly   352 EIQMEDLLKSLSVMKASK 369
            ...|||.  .:::.|.||
  Rat   458 PTTMEDF--EMALKKVSK 473

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG4701	NP_609721.1	CDC48	<21..368	CDD:273521	116/340 (34%)
		RecA-like_ATAD1	96..261	CDD:410928	72/171 (42%)
Katna1	NP_001004217.2	Kp60-NTD	7..74	CDD:439297
		RPT1	134..474	CDD:440835	118/343 (34%)
		RecA-like_KTNA1	212..381	CDD:410930	72/171 (42%)