DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG42685 and pkd1l3

DIOPT Version :9

Sequence 1:NP_609717.5 Gene:CG42685 / 34854 FlyBaseID:FBgn0261571 Length:1609 Species:Drosophila melanogaster
Sequence 2:XP_017949004.2 Gene:pkd1l3 / 101734692 -ID:- Length:1080 Species:Xenopus tropicalis


Alignment Length:841 Identity:158/841 - (18%)
Similarity:272/841 - (32%) Gaps:296/841 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   640 LLDTESQ-PTLESSHKYLI-------LHTLEPLVQIRLRVWVKGQGWADAFYTLRRNNGPQHGSC 696
            |:|||.| ..|.:...||:       ||:        ||:|....|...::|..|.|........
 Frog   102 LIDTEKQVQHLGAVDVYLLKTRYLGELHS--------LRLWHSNSGSRPSWYVHRVNVTDLLAQR 158

  Fly   697 TIYPFLGVEGFTMFEIDCPGFESPFPPI------TYRYMVSYGVVASNV---------------P 740
            |.| |...........||. .:..||.:      :.||::..|.|...:               |
 Frog   159 TWY-FCCDSWLASNFADCQ-LDRIFPAVSRGNLMSLRYLLFSGAVDKLLKDHLWLSVWTRSPWSP 221

  Fly   741 YSRIVLTLPAAETIMISICDAIDMCVEKRVEVKVLSIDKSMLTGQKEVMNYVPNFFKRGHWNRAY 805
            ::|:.........:::|:.          :.:.....|.|..|| |..:|.:...|:     .:.
 Frog   222 FTRVQRLCCCMSLLLLSLL----------INIMFWKGDDSTQTG-KFPINEIKISFQ-----SSL 270

  Fly   806 IMGIAAITFIETSIDGDEFYSYLTGLVASTGSQMEQITTLSSHMLIRL--HPVDFRGATVMAEMF 868
            |:.:..|..::..:           |:.   ..:.|:...|:.:.:.|  ||.....||....| 
 Frog   271 ILAVVNIIIVQMFL-----------LIQ---KPLTQVKLPSNKLRVALSPHPPAKVDATKQFLM- 320

  Fly   869 SHLGDSFSAIVQEHEWLHREGYYSLTAMHMFFMSILGKKTESHSNAMCSLHNPACMNLQIIDLEK 933
                 .|..:|   ::||:           :.:.|||:             .|.|          
 Frog   321 -----DFGKLV---DFLHK-----------YIIQILGE-------------TPKC---------- 343

  Fly   934 PFVIKFDPLIL-VRINSWLMSTWFLYRCIYFLGVIATQRHHPYDDALTIHKSGIAYQINVTEVTE 997
            |.....:|::. |...|:|:.:   |.|:..    ..|.:....:.:|.|:....:.::.|    
 Frog   344 PVTSSSEPILQHVESLSYLVQS---YICVQG----PNQENSTQRNVMTAHQCHFLHYLHQT---- 397

  Fly   998 NTK-DIQVKTID------HIHVIKLSTKLLYELQRRLNHSSILLQIISQQNFHNIYWWYPDPFPS 1055
            .|| .|||.::|      .||.|. :|.:.|||:.:|          ..|:|.:      .|.||
 Frog   398 LTKLQIQVSSLDLTFINTPIHYIH-ATNVFYELRDQL----------QSQHFSS------SPLPS 445

  Fly  1056 KTSVLIVHAYSPVQFFRSAKEFQLTNPLVYKTNITHFNDASFN-QYMTNNSIQNSTEVHIYSVML 1119
            .    :.::: ||...::....:|...|.|.........:||: .|||..|:.          |.
 Frog   446 S----VTNSF-PVPVAKNTLSSRLPKFLPYVCWFVLLAISSFSAYYMTLVSLD----------MT 495

  Fly  1120 NHKAMLAVRIVNCSELMYIKMRLHRWPTLGQIRQHACRITPDMQGKRIWIANSCERSPAYV-AIH 1183
            ..||        .|.|:.:.:.|.          |:..:.|.::              |:: .:.
 Frog   496 RQKA--------TSWLISMLLSLF----------HSLFLLPPVK--------------AFIQTVF 528

  Fly  1184 KPGEIRYKTEDKDQLSARGRKKGNRTHDGSETPEVRQKADFIDYDNEDIVEEVLPLNYSILLEIY 1248
            ....:|..|.|                |.:|..::                      :.||....
 Frog   529 MFRVLRRSTMD----------------DAAEEQQL----------------------HGILSLFA 555

  Fly  1249 QCNIWKNRSLDPGWSEDHCTTSFEHSRGSSVQCTCHTLGALSSRIFPISSQLFVEHIPVPIFTFN 1313
            .|         |.|....|     ......:.|:     .::..|..:..|..:|.     ..:.
 Frog   556 NC---------PDWELSGC-----RDPQDPIYCS-----PVNKAITSLKRQKLIEK-----RLYR 596

  Fly  1314 MILMIFFALLFLLLVFKFLLHLNIISAYL-KNP-EFRLQCDAS---------VGKSDQSFVSGSE 1367
            ::|.|...::||:        :.:|.||. |:| |:.|....|         :|..:..:...|.
 Frog   597 LVLEIAVHVVFLI--------MTMIMAYADKSPNEYNLNIAVSNSFSSTFSQIGNIEDFYSWTSS 653

  Fly  1368 ILLVIVTGGQEFAG--TTSNVKFYLKSP-----HRQQTSYQITQDPGHPK-----LLRNST 1416
            .||..:.  .::.|  |..|. |.|.||     .|.|:.|.| .|.||.|     |.||.|
 Frog   654 TLLPNLY--SQYTGFITDGNC-FLLGSPRIRQLRRAQSQYSI-GDTGHYKAEWLPLGRNDT 710

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42685NP_609717.5 REJ 411..753 CDD:307914 30/141 (21%)
PLAT 1367..1480 CDD:238061 21/62 (34%)
pkd1l3XP_017949004.2 PLAT 66..183 CDD:412108 23/90 (26%)
PKD_channel 638..1035 CDD:400395 23/77 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1276906at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

Return to query results.
Submit another query.