DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3473 and ube2ka

DIOPT Version :9

Sequence 1:NP_001285937.1 Gene:CG3473 / 34849 FlyBaseID:FBgn0028913 Length:151 Species:Drosophila melanogaster
Sequence 2:NP_001013500.1 Gene:ube2ka / 541355 ZFINID:ZDB-GENE-050320-48 Length:200 Species:Danio rerio


Alignment Length:104 Identity:58/104 - (55%)
Similarity:74/104 - (71%) Gaps:1/104 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 VTGPKDSPFEGGNFKLELFLPEDYPMKAPKVRFLTKIFHPNIDRV-GRICLDILKDKWSPALQIR 102
            :.||.|:|:|||.::||:.:||.||...|||||:|||:||||..| |.|||||||.:|:.|:.:|
Zfish    43 IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKGQWAAAMTLR 107

  Fly   103 TVLLSIQALLSAPNPDDPLANDVAELWKVNERRAIQLAR 141
            |||||:||||:|..||||....||..:|.|.....|.||
Zfish   108 TVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTAR 146

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3473NP_001285937.1 UBCc 3..151 CDD:294101 58/104 (56%)
COG5078 7..149 CDD:227410 58/104 (56%)
ube2kaNP_001013500.1 COG5078 1..148 CDD:227410 58/104 (56%)
UBCc 6..148 CDD:238117 58/104 (56%)
UBA_like_SF 163..200 CDD:304366
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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