DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3473 and Ube2d1

DIOPT Version :10

Sequence 1:NP_609715.1 Gene:CG3473 / 34849 FlyBaseID:FBgn0028913 Length:151 Species:Drosophila melanogaster
Sequence 2:NP_001102000.1 Gene:Ube2d1 / 361831 RGDID:1307886 Length:147 Species:Rattus norvegicus


Alignment Length:143 Identity:69/143 - (48%)
Similarity:92/143 - (64%) Gaps:0/143 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 RIIKETQRLLEDPVPGISATPDECNARYFHVLVTGPKDSPFEGGNFKLELFLPEDYPMKAPKVRF 71
            ||.||...|..||....||.|...:..::...:.||.||.::||.|.|.:..|.|||.|.||:.|
  Rat     5 RIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAF 69

  Fly    72 LTKIFHPNIDRVGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAELWKVNERRA 136
            .|||:||||:..|.||||||:.:|||||.:..|||||.:||..|||||||..|:|:::|.::.:.
  Rat    70 TTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKY 134

  Fly   137 IQLARECTLKHAM 149
            .:.|||.|.|:||
  Rat   135 NRHAREWTQKYAM 147

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3473NP_609715.1 UBCc_UBE2N 4..147 CDD:467433 66/139 (47%)
Ube2d1NP_001102000.1 UBCc_UBE2D 3..145 CDD:467412 66/139 (47%)

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