DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG3473 and ubc-20

DIOPT Version :9

Sequence 1:NP_001285937.1 Gene:CG3473 / 34849 FlyBaseID:FBgn0028913 Length:151 Species:Drosophila melanogaster
Sequence 2:NP_497174.1 Gene:ubc-20 / 175185 WormBaseID:WBGene00006715 Length:199 Species:Caenorhabditis elegans


Alignment Length:100 Identity:49/100 - (49%)
Similarity:69/100 - (69%) Gaps:3/100 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 VTGPKDSPFEGGNFKLELFLPEDYPMKAPKVRFLTKIFHPNI-DRVGRICLDILKDKWSPALQIR 102
            :.||.|:|:.||.|.|::.:|:.||...|.|:|.|||:|||: .:.|.||||||||:|:.:|.:|
 Worm    43 IRGPPDTPYAGGMFDLDIKIPDQYPFSPPNVKFSTKIWHPNVSSQTGVICLDILKDQWAASLTLR 107

  Fly   103 TVLLSIQALLSAPNPDDPLANDVAELWKVNERRAI 137
            |||||||||:..|.|.||....||:.:.  |:.|:
 Worm   108 TVLLSIQALMCTPEPKDPQDAVVAKQYM--EKPAV 140

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3473NP_001285937.1 UBCc 3..151 CDD:294101 49/99 (49%)
COG5078 7..149 CDD:227410 49/99 (49%)
ubc-20NP_497174.1 UQ_con 8..149 CDD:365926 49/99 (49%)
UBA_II_E2_UBE2K_like 163..198 CDD:270498
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.