DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab14 and rab5d

DIOPT Version :9

Sequence 1:NP_788056.1 Gene:Rab14 / 34840 FlyBaseID:FBgn0015791 Length:239 Species:Drosophila melanogaster
Sequence 2:NP_001025576.1 Gene:rab5d / 594964 XenbaseID:XB-GENE-489496 Length:213 Species:Xenopus tropicalis


Alignment Length:187 Identity:75/187 - (40%)
Similarity:114/187 - (60%) Gaps:4/187 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 FKYIIIGDMGVGKSCLLHQFTEKKFMANCPHTIGVEFGTRIIEVDDKKIKLQIWDTAGQERFRAV 100
            ||.:::|||.||||.|:.:|.:.:|......|||..|..:.:.:||..:|.:|||||||||:.::
 Frog    20 FKLVLLGDMAVGKSSLVLRFVKGQFDEFQETTIGAAFLAQSVCLDDTTVKFEIWDTAGQERYHSL 84

  Fly   101 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTRNLTNPSTVIFLIGNKSDLESTREVTYEEAKE 165
            ...|||||..|::|:|||:..|::...:|:.:.:...:|:.||.|.||||||...|.|.||||:.
 Frog    85 APMYYRGAQAAIVVFDITKPETFDRAKAWVKELQRQASPNIVIALAGNKSDLAEKRMVEYEEAQA 149

  Fly   166 FADENGLMFLEASAMTGQNVEEAFLETARKI----YQNIQEGRLDLNASESGVQHRP 218
            :|::.||:|:|.||.|..||.|.||..|:|:    .||......:...:..|.:.:|
 Frog   150 YAEDTGLLFMETSAKTAMNVNELFLAIAKKMPKSDAQNPTHAARNRGVNVQGSEQQP 206

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab14NP_788056.1 Rab14 34..199 CDD:133322 71/166 (43%)
rab5dNP_001025576.1 Rab5_related 19..181 CDD:206653 71/160 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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