DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rab14 and rab11ba

DIOPT Version :9

Sequence 1:NP_788056.1 Gene:Rab14 / 34840 FlyBaseID:FBgn0015791 Length:239 Species:Drosophila melanogaster
Sequence 2:NP_999935.1 Gene:rab11ba / 406798 ZFINID:ZDB-GENE-040426-2860 Length:218 Species:Danio rerio


Alignment Length:214 Identity:97/214 - (45%)
Similarity:130/214 - (60%) Gaps:15/214 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 YNYIFKYIIIGDMGVGKSCLLHQFTEKKFMANCPHTIGVEFGTRIIEVDDKKIKLQIWDTAGQER 96
            |:|:|:.::|||.|||||.||.:||..:|......||||||.||.|:||.|.||.||||||||||
Zfish     8 YDYLFRVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 72

  Fly    97 FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTRNLTNPSTVIFLIGNKSDLESTREVTYE 161
            :||:|.:|||||.|||:||||.:..||.::..||.:.|:..:.:.||.|:||||||...|.|..:
Zfish    73 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADNNIVIMLVGNKSDLRHLRAVPTD 137

  Fly   162 EAKEFADENGLMFLEASAMTGQNVEEAFLETARKIYQNIQEGRLDLNASESGVQHRPSQ------ 220
            ||:.||::|.|.|:|.||:...||||||.....:||:.:.:.::   ....|....|..      
Zfish   138 EARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQM---VDRPGHDESPGNNVVDIS 199

  Fly   221 --PSRTSLSSEATGAKDQC 237
              |:...|.    |.|.||
Zfish   200 VPPTTDGLK----GNKFQC 214

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab14NP_788056.1 Rab14 34..199 CDD:133322 88/164 (54%)
rab11baNP_999935.1 PLN03110 5..217 CDD:178657 97/214 (45%)
Rab11_like 9..173 CDD:206660 86/163 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.