DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab14 and Rab2b

DIOPT Version :9

Sequence 1:NP_788056.1 Gene:Rab14 / 34840 FlyBaseID:FBgn0015791 Length:239 Species:Drosophila melanogaster
Sequence 2:NP_001032734.1 Gene:Rab2b / 305853 RGDID:1309117 Length:215 Species:Rattus norvegicus


Alignment Length:212 Identity:120/212 - (56%)
Similarity:154/212 - (72%) Gaps:6/212 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 YNYIFKYIIIGDMGVGKSCLLHQFTEKKFMANCPHTIGVEFGTRIIEVDDKKIKLQIWDTAGQER 96
            |.|:||||||||.||||||||.|||:|:|......|||||||.|::.:|.|:||||||||||||.
  Rat     3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 67

  Fly    97 FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDTRNLTNPSTVIFLIGNKSDLESTREVTYE 161
            ||::||||||||||||:|||||||.|:|||:|||.|.|..::.:.||.||||||||||.|:|..|
  Rat    68 FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKRE 132

  Fly   162 EAKEFADENGLMFLEASAMTGQNVEEAFLETARKIYQNIQEGRLDLNASESGVQHRPSQ------ 220
            |.:.||.|:||:|:|.||.|..|||||::.||::|::.||:|..|::...:|::..|.|      
  Rat   133 EGEAFAREHGLIFMETSAKTACNVEEAYINTAKEIHRKIQQGLFDVHNEANGIKIGPQQSISLVG 197

  Fly   221 PSRTSLSSEATGAKDQC 237
            |..:..:|...|....|
  Rat   198 PCPSQQNSSDIGPDSGC 214

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab14NP_788056.1 Rab14 34..199 CDD:133322 108/164 (66%)
Rab2bNP_001032734.1 PLN03108 1..215 CDD:178655 120/212 (57%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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