DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(2)34Fc and Frrs1

DIOPT Version :9

Sequence 1:NP_001285930.1 Gene:l(2)34Fc / 34838 FlyBaseID:FBgn0261534 Length:159 Species:Drosophila melanogaster
Sequence 2:XP_038959758.1 Gene:Frrs1 / 310810 RGDID:1306883 Length:592 Species:Rattus norvegicus


Alignment Length:154 Identity:50/154 - (32%)
Similarity:78/154 - (50%) Gaps:10/154 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 FRLLVLAACLAI-SVHAYSDGAPKAACRDLTPQHGAKLQVTKPPYSIS-GPSHVRSDQKLTLTLG 64
            |.|.||...|.| ||.||.:|....:|..:.|||....| :.|.:.|: .....:...::.:||.
  Rat     6 FTLSVLVCALLICSVTAYPNGRVARSCAGMIPQHNHSPQ-SDPVHKITVSQMKFKPGDQIKVTLS 69

  Fly    65 GDEFLGFMIQARDGQN---RVVGQFQVVDSVHSQTLDCSG-KDDTITHLSAQKGKPLTGITFDWI 125
            |..|.||:::||:.::   ..:|.|.::||..||.|.|.. :...::|.|:   ...|.|...|.
  Rat    70 GPPFRGFLLEARNAEDLSGPPIGTFTLIDSDSSQILTCEDVQGFAVSHTSS---SIKTEIKVYWN 131

  Fly   126 PPAGYKGNVKFMATVVQTGFVYWV 149
            .|:....:|:|:|||||...:|||
  Rat   132 APSSAPDHVQFLATVVQKYKIYWV 155

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(2)34FcNP_001285930.1 Reeler 27..149 CDD:280232 37/126 (29%)
Frrs1XP_038959758.1 Reeler 32..155 CDD:396550 37/126 (29%)
DOMON_SDR_2_like 192..354 CDD:187686
Cyt_b561_FRRS1_like 320..533 CDD:176490
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166335031
Domainoid 1 1.000 57 1.000 Domainoid score I10695
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001198
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45828
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.940

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