DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(2)34Fc and C13B4.1

DIOPT Version :10

Sequence 1:NP_609710.1 Gene:l(2)34Fc / 34838 FlyBaseID:FBgn0261534 Length:159 Species:Drosophila melanogaster
Sequence 2:NP_001360457.1 Gene:C13B4.1 / 175104 WormBaseID:WBGene00007545 Length:1025 Species:Caenorhabditis elegans


Alignment Length:157 Identity:30/157 - (19%)
Similarity:56/157 - (35%) Gaps:43/157 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 ACRDLTPQHGAKLQV---TKPPYSISGPSHVRSDQKLTLTLG--GDEFL---------------- 69
            :|.::....||..||   .:..:.|.||::...::.:.:.||  .||.:                
 Worm   212 SCYNVDGNIGASYQVISDNQIAFEIFGPANTTVNENVYVALGFSDDEKMANISVIECSNLPSETA 276

  Fly    70 ---------GFMIQARDGQNRVVGQF--QVVDSVHSQTLDCSGKDDTITHLSAQKGKPLTGITFD 123
                     ||.....||:..:..:|  |.:..:...::.|.|    :.::..:...|.   .|.
 Worm   277 PTMKFSYNPGFKNARIDGEPPIRAKFIQQSIGRISDGSIYCKG----VVNVGGEAENPQ---IFK 334

  Fly   124 WIPPAGYKGNVKFMATV-VQTGFV-YW 148
            |....||  ::.|.|.. ..||.. :|
 Worm   335 WNKNQGY--HLMFAAGFSADTGLTQHW 359

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(2)34FcNP_609710.1 Reeler 27..149 CDD:460411 30/156 (19%)
C13B4.1NP_001360457.1 DoH 65..192 CDD:214768
DOMON_SDR_2_like 193..367 CDD:187686 30/157 (19%)
DoH 398..555 CDD:214768
DoH 605..752 CDD:214768
Cyt_b561_FRRS1_like 718..931 CDD:176490
Blue background indicates that the domain is not in the aligned region.

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