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Protein Alignment mTTF and Mterf1

DIOPT Version :10

Sequence 1:	NP_609709.1	Gene:	mTTF / 34837	FlyBaseID:	FBgn0028530	Length:	410	Species:	Drosophila melanogaster
Sequence 2:	NP_445951.2	Gene:	Mterf1 / 85261	RGDID:	621318	Length:	374	Species:	Rattus norvegicus

Alignment Length:	318	Identity:	59/318 - (18%)
Similarity:	115/318 - (36%)	Gaps:	92/318 - (28%)

- Green bases have known domain annotations that are detailed below.

  Fly   140 ELKMQLLKSMDFKDINHFVPFLRLTVPRLRKLVGALNSERDAMPQRNRVYYISEKLDVSPDIVSK 204
            ||||.|| |....|                |::|::.|.......|. ...:|::.|:..:|::.
  Rat    83 ELKMFLL-SKGASD----------------KVIGSIISRYPRAITRT-PESLSKRWDLWREIMAS 129

  Fly   205 YLSKRLFILEMPFEMFEKNLQHMIDYNV-------------------------SPINVLKDLWAF 244
            .|.....:...|...|..|....::.|:                         :.:|:.|.:..|
  Rat   130 DLEIVNILERSPESFFRSNNNLNLENNIKFLCSVGLTHKCLCRLLTSAPRTFSNSLNLNKQMVEF 194

  Fly   245 ------------------RYTPKSVQLRLERAKRAKKDKIMPWMVRCPEPILQRSLKLSLDELKV 291
                              :...|:..:.::..||.|.:          ...||.:..|..::|.:
  Rat   195 LQETGISLGHNNPTDFVRKIISKNPSILIQSTKRVKTN----------IEFLQSTFNLDKEDLLL 249

  Fly   292 L-----------------GEFSSVVEYLAHRLGFSTSEAKAIMDKHPQVHTVRVTKIKEVLDYLL 339
            |                 ..::::.:.|. .||.:..|.:..:..:..:..:...|..:.:|.||
  Rat   250 LICGPGARILDLSNDCTKRNYTNIKKRLL-SLGCTEEEVQKFVLSYLNMIFLSEKKFNDKIDCLL 313

  Fly   340 DEAQFTRFEVAQNPRILCHSLKTTKERMEELKSHG--CRPSSLVILCRSRREYDKFLQ 395
            :| :.:..::.:|||:|..|:.|.|.|:.||...|  ...||:.:|..|:|.|:..|:
  Rat   314 EE-KISTSQILENPRVLDSSIHTLKTRIRELAHAGYDVSTSSIALLSWSQRRYEAKLK 370

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.