DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Send2 and Gzmn

DIOPT Version :9

Sequence 1:NP_609708.2 Gene:Send2 / 34836 FlyBaseID:FBgn0264253 Length:239 Species:Drosophila melanogaster
Sequence 2:XP_038949596.1 Gene:Gzmn / 691668 RGDID:1597226 Length:465 Species:Rattus norvegicus


Alignment Length:242 Identity:73/242 - (30%)
Similarity:105/242 - (43%) Gaps:29/242 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 LLLLALNSLSAGPVIRPEERIIGGQPIGIEEAPWQV---SIQRDGK-HLCGGSIYSADIIITAAH 67
            :||..|..|.||     .|.||||..:.....|:..   |::.||. ..|||.:.....::||||
  Rat   223 ILLTLLLPLEAG-----AEEIIGGHEVKPHSYPYMAFIQSVKADGNISYCGGFLVQDYFVLTAAH 282

  Fly    68 CVQGQGYQVRAGS---ALKNSNGSVVDVAAIRTHEGLGN-----DIAIVRLSKPLEFTNQVQP-- 122
            | :|:...|..|:   ..|.....::.|....:|.....     ||.:::|....:.|..|..  
  Rat   283 C-EGESMTVMLGAHNIKAKEDTQQIISVEKAISHPAYNKVDYSYDIMLLKLKSKAKRTKAVSTLM 346

  Fly   123 IPLAKTNPPPGSIAFVSGWGSSSYYSHPID--LQGVNLYIQWPYYC-----GLTEPSRICAGSFG 180
            :|.:.....||.:..|:|||.:|.....:.  |:...|.||....|     ...:..:||||...
  Rat   347 LPQSDAQVKPGDVCHVAGWGLTSINGTKVSSCLREAELIIQEDQECEKIFYNYFKTIQICAGDPN 411

  Fly   181 RA--ACKGDSGGPLVFDQQLVGVVSGGTKDCTYSSIYTSVPYFREWI 225
            ..  |.|||||||||.|.:..||::.|.|....|.::|.|.||..||
  Rat   412 NVQDASKGDSGGPLVCDNRAYGVIAYGKKGEISSGVFTKVVYFLPWI 458

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Send2NP_609708.2 Tryp_SPc 26..225 CDD:214473 64/221 (29%)
Tryp_SPc 27..225 CDD:238113 64/220 (29%)
GzmnXP_038949596.1 Tryp_SPc 21..>194 CDD:238113
Tryp_SPc 238..461 CDD:238113 66/222 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1076876at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

Return to query results.
Submit another query.