DRSC/TRiP Functional Genomics Resources

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Protein Alignment Send2 and Cma1

DIOPT Version :9

Sequence 1:NP_609708.2 Gene:Send2 / 34836 FlyBaseID:FBgn0264253 Length:239 Species:Drosophila melanogaster
Sequence 2:NP_037224.1 Gene:Cma1 / 25627 RGDID:2365 Length:247 Species:Rattus norvegicus


Alignment Length:246 Identity:67/246 - (27%)
Similarity:105/246 - (42%) Gaps:29/246 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 LLLLALNSLSAGPVIRPEERIIGGQPIGIEEAPWQ--VSIQRDGKHL--CGGSIYSADIIITAAH 67
            ||||..:|..||       .||||........|:.  :.|.....:|  |.|.:...:.::||||
  Rat     9 LLLLLGSSTKAG-------EIIGGTECIPHSRPYMAYLEIVTSDNYLSACSGFLIRRNFVLTAAH 66

  Fly    68 CVQGQGYQVRAGS---ALKNSNGSVVDVAAIRTHEGLG-----NDIAIVRLSKPLEFTNQVQPIP 124
            |. |:...|..|:   ..|......::|.....|....     :||.:::|.:..:.|..|..:|
  Rat    67 CA-GRSITVLLGAHNKTYKEDTWQKLEVEKQFIHPNYDKRLVLHDIMLLKLKEKAKLTLGVGTLP 130

  Fly   125 L-AKTN-PPPGSIAFVSGWGSSSYYSHPID-LQGVNLYIQWPYYC----GLTEPSRICAGSFGRA 182
            | |..| .|||.:....|||.::......| ||.|.:.:|.|..|    .....|::|.|:..:.
  Rat   131 LSANFNFIPPGRMCRAVGWGRTNVNEPASDTLQEVKMRLQEPQSCKHFTSFQHKSQLCVGNPKKM 195

  Fly   183 --ACKGDSGGPLVFDQQLVGVVSGGTKDCTYSSIYTSVPYFREWILNAIDE 231
              ..||||||||:......|:.|....:....:::|.:.::|.||...:.|
  Rat   196 QNVYKGDSGGPLLCAGIAQGIASYVHPNAKPPAVFTRISHYRPWINKILRE 246

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Send2NP_609708.2 Tryp_SPc 26..225 CDD:214473 57/219 (26%)
Tryp_SPc 27..225 CDD:238113 57/218 (26%)
Cma1NP_037224.1 Tryp_SPc 21..240 CDD:214473 57/219 (26%)
Tryp_SPc 22..243 CDD:238113 59/221 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1076876at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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