DRSC/TRiP Functional Genomics Resources

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Protein Alignment Send2 and LOC102553861

DIOPT Version :9

Sequence 1:NP_609708.2 Gene:Send2 / 34836 FlyBaseID:FBgn0264253 Length:239 Species:Drosophila melanogaster
Sequence 2:NP_001316820.1 Gene:LOC102553861 / 102553861 RGDID:7500593 Length:248 Species:Rattus norvegicus


Alignment Length:243 Identity:76/243 - (31%)
Similarity:110/243 - (45%) Gaps:29/243 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 LLLALNSLSAGPVIRPEERIIGGQPIGIEEAPWQVSIQ------RDGKHLCGGSIYSADIIITAA 66
            |||.|.::|..|.....| ||||........|:...:|      ||  .:|||.:...|.::|||
  Rat     3 LLLLLLTVSLAPTTEAAE-IIGGHEADPHSRPYMAYLQYKNEDSRD--TICGGFLIREDFVLTAA 64

  Fly    67 HCVQGQGYQVRAGS---ALKNSNGSVVDVAAIRTH-----EGLGNDIAIVRLSKPLEFTNQVQPI 123
            || .|....|..|:   ..:.....|:.|..|..|     :.:.|||.:::|....:.|..|:.:
  Rat    65 HC-SGSKINVTLGAHNIKEQEKTQQVIPVVKIIPHPAYNAKTISNDIMLLKLKSKAKRTRAVKTL 128

  Fly   124 PLAKTN--PPPGSIAFVSGWGS-SSYYSHPIDLQGVNLYIQWPYYC------GLTEPSRICAG-- 177
            .|.::|  ..||.:.:|:|||. ......|..||.|.|.:|....|      ...:.::||||  
  Rat   129 SLPRSNFKVKPGDVCYVAGWGKLGPMGKFPDKLQEVELTVQEDQECETYLKNAYDKANQICAGDP 193

  Fly   178 SFGRAACKGDSGGPLVFDQQLVGVVSGGTKDCTYSSIYTSVPYFREWI 225
            ....|:.:||||||||..:...|:||.|.||.:....:|.|..|..||
  Rat   194 KIKCASFQGDSGGPLVCKKVAAGIVSYGRKDGSTPRAFTKVSTFLSWI 241

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Send2NP_609708.2 Tryp_SPc 26..225 CDD:214473 67/223 (30%)
Tryp_SPc 27..225 CDD:238113 67/222 (30%)
LOC102553861NP_001316820.1 Tryp_SPc 20..241 CDD:214473 68/224 (30%)
Tryp_SPc 21..244 CDD:238113 69/224 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1076876at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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