DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG33090 and apg-1

DIOPT Version :9

Sequence 1:NP_788055.2 Gene:CG33090 / 34835 FlyBaseID:FBgn0028916 Length:948 Species:Drosophila melanogaster
Sequence 2:NP_740937.1 Gene:apg-1 / 173304 WormBaseID:WBGene00000158 Length:829 Species:Caenorhabditis elegans


Alignment Length:616 Identity:103/616 - (16%)
Similarity:199/616 - (32%) Gaps:195/616 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   454 RPILNDETLPDWYKCAIFNQLYFISDGGTIWLKCDSSLG-----KELAYDDPRLAYGRFGYLEGH 513
            |....|:..|  :||....:|.:|.     .|...:..|     |.:|:  ||....|.||| |.
 Worm    57 RESFRDDDSP--WKCRNIAKLLYIH-----MLGYPAHFGQMECMKLVAH--PRFTDKRIGYL-GA 111

  Fly   514 EYRMYNTYDVHFYASPALAHLWPNLQVSLQY-------DFKDAIAAEL-----NDTRKMLYDGKV 566
            ...:....:||...:.:|.:   :|..|.|:       ......:||:     |:..|::.....
 Worm   112 MLLLDERSEVHMLVTNSLKN---DLTCSTQFVSGLALCTLGSICSAEMCRDLANEVEKIIKQNNA 173

  Fly   567 ------------MPRKVKN-------CVPHDLGDPD---------------EEPFTLINCY---- 593
                        :.|||..       |....||:.:               |:...::|.:    
 Worm   174 YLKKKAALCAFRIVRKVPELMEVFIPCTRSLLGEKNHGVLMGATTLVTEMCEKSPDVLNHFKKLV 238

  Fly   594 --------NI--------HDVNDWKD--LNTKFVLQVYR-----DYYVLNELAQAQSDNASKFSS 635
                    |:        |||....|  |..| :|::.|     |..|..|:....:..|:...:
 Worm   239 PNLVRILKNLLMSGYSPEHDVTGISDPFLQVK-ILRLLRVLGKDDVRVTEEMNDILAQVATNTET 302

  Fly   636 IEFIDKESLYELYSQDNKRKNSADEKQQNRKSASMYINETNGKVYLMDAIGYLKAMYASCKAIME 700
            .:.:....|||......:.|:.:..:.........::..|:..:..:.....||.::...:|:  
 Worm   303 AKNVGNAILYETVLTIMEIKSESGLRILAVNILGRFLLNTDKNIRYVALNTLLKTVHVDYQAV-- 365

  Fly   701 RTIEYDKDNDGLIENTKMPDQTYDSWVMDGPSAYCSGLWLAALQAMSAMATILDQPNDCLRYQDI 765
                 .:..:.::|..|.||.:...                  :||.....::::.|..:..:::
 Worm   366 -----QRHRNVVVECLKDPDISIRK------------------RAMELCFALMNRTNIAIMTKEV 407

  Fly   766 ---LEKGKRSLEEKLWNGSYY---RFDLSHS-HRDTIMADQLCGHWYLKSCGFDYEIYPKENVRT 823
               ||......:.:..:..|.   |:..:|. |.||::.       .|:..|   :..|.|.|..
 Worm   408 LIFLETADAEFKSECASRMYIATERYSPNHEWHLDTMIT-------VLRLAG---KYVPDEVVSC 462

  Fly   824 ALKRIYDNNVMG-------FHEGNIGAANGFIANASEP----------------TKPGHVDNSNI 865
            .::.|..|..:.       :|.....|.|      ::|                .:|..||::.|
 Worm   463 MIQMISANEQLQSYAVSQLYHAAQKDAIN------AQPLLQVAFWTIGEFGDLLLQPTDVDSTPI 521

  Fly   866 QAEEVWPGVVYALAATMIQEGMFEEAFQTA-----------------GGMYKTLSQRIGMNFETP 913
            ...:|              .|:||....:|                 |..:::...|||......
 Worm   522 SENDV--------------VGVFESVLPSALTSLWTKCYGVTALAKLGTRFQSTGDRIGALVRMN 572

  Fly   914 EA-LYGEKRYRSIGYMRPLSIWSMQVALERR 943
            :| :..|.:.||:.:...|::..::..|..|
 Worm   573 QAHIQLELQQRSVEFNVILNLGDLRDGLLER 603

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG33090NP_788055.2 GBA2_N 132..445 CDD:289023
DUF608 505..937 CDD:282531 88/552 (16%)
apg-1NP_740937.1 Adaptin_N 45..595 CDD:279882 101/606 (17%)
Alpha_adaptinC2 721..827 CDD:197886
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG4354
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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