DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha5 and Htr3a

DIOPT Version :9

Sequence 1:NP_001356885.1 Gene:nAChRalpha5 / 34826 FlyBaseID:FBgn0028875 Length:837 Species:Drosophila melanogaster
Sequence 2:XP_006243083.1 Gene:Htr3a / 79246 RGDID:61818 Length:488 Species:Rattus norvegicus


Alignment Length:496 Identity:146/496 - (29%)
Similarity:233/496 - (46%) Gaps:56/496 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   315 RLLHDLLDPYNTLERPVLNESDPLQLSFGLTLMQIIDVDEKNQLLVTNVWLKLEWNDMNLRWNTS 379
            ||...||..|....|||.:...|..:|..:.:..|::||||||:|.|.:|.:..|.|..|:|...
  Rat    41 RLSDHLLANYKKGVRPVRDWRKPTLVSIDVIMYAILNVDEKNQVLTTYIWYRQFWTDEFLQWTPE 105

  Fly   380 DYGGVKDLRIPPHRIWKPDVLMYNSADEGFDGTYQTNVVVRNNGSCLYVPPGIFKSTCKIDITWF 444
            |:..|..|.||...||.||:|:....|.|...:. ..|.|.:.|......|....:.|.:||..|
  Rat   106 DFDNVTKLSIPTDSIWVPDILINEFVDVGKSPSI-PYVYVHHQGEVQNYKPLQLVTACSLDIYNF 169

  Fly   445 PFDDQRCEMKFGSWTYDGFQLDLQL---QDETGGDISSYVLNGEWELLGVPGKRNEIYYNCCPEP 506
            |||.|.|.:.|.||.:....:::.|   .:|...|.|.::..||||||||..|..|.... ....
  Rat   170 PFDVQNCSLTFTSWLHTIQDINISLWRTPEEVRSDKSIFINQGEWELLGVFTKFQEFSIE-TSNS 233

  Fly   507 YIDITFAIIIRRRTLYYFFNLIIPCVLIASMALLGFTLPPDSGEKLSLGVTILLSLTVFLNMVAE 571
            |.::.|.::||||.|:|..:|::|.:.:..:.::||.|||||||::|..:|:||..:|||.:|::
  Rat   234 YAEMKFYVVIRRRPLFYAVSLLLPSIFLMVVDIVGFCLPPDSGERVSFKITLLLGYSVFLIIVSD 298

  Fly   572 TMPATSDAVPLLGTYFNCIMFMVASSVVSTILILNYHHRNADTHEMSEWIRIVFLCWLPWILRMS 636
            |:|||:...||:|.||...|.::..|:..||.|:...|:......:.:|:|.:.|..:.|:|.:.
  Rat   299 TLPATAIGTPLIGVYFVVCMALLVISLAETIFIVQLVHKQDLQRPVPDWLRHLVLDRIAWLLCLG 363

  Fly   637 RPGRPLILEFPTTPCSDTSSERKHQILSDVELKERSSKSLLANVLDIDDDFRHNCRPMTPGGTLP 701
            .  :|:....|.|..::.:.:....:|..:    .:..|.:.:..|::...|....|:.|    |
  Rat   364 E--QPMAHRPPATFQANKTDDCSGSLLPAM----GNHCSHVGSPQDLEKTSRSRDSPLPP----P 418

  Fly   702 HNPAFYRTVYGQGDDGSIGPIGSTRMPDAVTHHTCIKSSTEYELGLILKEIRFITDQLRKDDECN 766
            .             :.|:...|                        :|:|:..|...|.|.||..
  Rat   419 R-------------EASLAVRG------------------------LLQELSSIRHSLEKRDEMR 446

  Fly   767 DIANDWKFAAMVVDRLCLIIFTMFTILA---TIAVLLSAPH 804
            ::|.||.....|:|||...|: :..:||   |:..|.|..|
  Rat   447 EVARDWLRVGYVLDRLLFRIY-LLAVLAYSITLVTLWSIWH 486

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha5NP_001356885.1 LIC 313..802 CDD:273305 144/492 (29%)
Htr3aXP_006243083.1 LIC 5..482 CDD:273305 143/490 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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