DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha5 and Chrna10

DIOPT Version :9

Sequence 1:NP_001356885.1 Gene:nAChRalpha5 / 34826 FlyBaseID:FBgn0028875 Length:837 Species:Drosophila melanogaster
Sequence 2:XP_006229953.1 Gene:Chrna10 / 64574 RGDID:620142 Length:492 Species:Rattus norvegicus


Alignment Length:500 Identity:172/500 - (34%)
Similarity:252/500 - (50%) Gaps:79/500 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   307 CLAGYHEKRLLH----DLLDPYNTLERPVLNESDPLQLSFGLTLMQIIDVDEKNQLLVTNVWLKL 367
            ||..  |.||.|    ||...|.:..|||.:....|.::..:||.||||:||:||:|...:|::.
  Rat    67 CLGA--EGRLAHKLFRDLFANYTSALRPVADTDQTLNVTLEVTLSQIIDMDERNQVLTLYLWIRQ 129

  Fly   368 EWNDMNLRWNTSDYGGVKDLRIPPHRIWKPDVLMYNSADEGFDGTYQTNVVVRNNGSCLYVPPGI 432
            ||.|..|.|:...||.:..:|||...:|:||:::||.||.....:..||||||::|:..:..|.|
  Rat   130 EWTDAYLHWDPKAYGDLDAIRIPSRLVWRPDIVLYNKADTQPPASASTNVVVRHDGAVRWDAPAI 194

  Fly   433 FKSTCKIDITWFPFDDQRCEMKFGSWTYDGFQLDLQLQDETGGDISSYVLNGEWELLGVPGKRNE 497
            .:|:|::|::.||||.|||.:.|||||:.|.|||::.:. |...::.:|.|.||.:||:|.:|..
  Rat   195 TRSSCRVDVSAFPFDAQRCGLTFGSWTHGGHQLDVRPRG-TSASLADFVENVEWRVLGMPARRRV 258

  Fly   498 IYYNCCPEPYIDITFAIIIRRRTLYYFFNLIIPCVLIASMALLGFTLPPDSGEKLSLGVTILLSL 562
            :.|.||.|||.|:||.:::|||...|..||::|||.|:.:|.|.|.||.|||||:|||||:||:|
  Rat   259 LTYGCCSEPYPDVTFTLLLRRRAAAYVCNLLLPCVFISLLAPLAFHLPADSGEKVSLGVTVLLAL 323

  Fly   563 TVFLNMVAETMPATSDAVPLLGTYFNCIMFMVASSVVSTILILNYHHRNADTHEMSEWIRIVFLC 627
            |||..::||:|| .:::|||:|.|:...|.||..|...||||:|.|:...:.|.:..|.|::.|.
  Rat   324 TVFQLILAESMP-PAESVPLIGKYYMATMTMVTFSTALTILIMNLHYCGPNAHPVPAWARVLLLG 387

  Fly   628 WLPWILRMSRPGRPLILEFPTTPCSDTSSERKHQILSDVELKERSSKSLLANVLDIDDDFRHNCR 692
            .|...|.:...|.         ||..:                                     :
  Rat   388 HLAKGLCVRERGE---------PCGQS-------------------------------------K 406

  Fly   693 PMTPGGTLPHNPAFYRTVYGQGDDGSIGPIGSTRMPDAVTHHTCIKSSTEYELGLILKEIRFITD 757
            |:....:|...||              .|.|....|..:.|...           :|..|..|..
  Rat   407 PLESAPSLQPPPA--------------SPAGPCHEPRCLCHQEA-----------LLHHIASIAS 446

  Fly   758 QLRKDDECNDIANDWKFAAMVVDRLCLIIFTMFTILATIAVLLSA 802
            ..|..........|||..|.|:||..|.||....::.::.||:.|
  Rat   447 TFRSHRAAQRRHEDWKRLARVMDRFFLGIFFCMALVMSLIVLVQA 491

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha5NP_001356885.1 LIC 313..802 CDD:273305 169/492 (34%)
Chrna10XP_006229953.1 LIC 60..476 CDD:273305 167/483 (35%)
Neur_chan_LBD 77..280 CDD:280998 83/203 (41%)
Neur_chan_memb 288..482 CDD:280999 76/265 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D363540at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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