DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha5 and CHRNA9

DIOPT Version :9

Sequence 1:NP_001356885.1 Gene:nAChRalpha5 / 34826 FlyBaseID:FBgn0028875 Length:837 Species:Drosophila melanogaster
Sequence 2:NP_060051.2 Gene:CHRNA9 / 55584 HGNCID:14079 Length:479 Species:Homo sapiens


Alignment Length:523 Identity:179/523 - (34%)
Similarity:278/523 - (53%) Gaps:60/523 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   291 HSWI-FLLIYL---NLSAKVCLAGYHEKRLLHDLLDPYNTLERPVLNESDPLQLSFGLTLMQIID 351
            ||.| |..||.   .|.|.....|.:.::|.:||.:.|:...|||.:....|.::..:||.||.|
Human     5 HSCISFCWIYFAASRLRAAETADGKYAQKLFNDLFEDYSNALRPVEDTDKVLNVTLQITLSQIKD 69

  Fly   352 VDEKNQLLVTNVWLKLEWNDMNLRWNTSDYGGVKDLRIPPHRIWKPDVLMYNSADEGFDGTYQTN 416
            :||:||:|...:|::..|:|..|.|:...|.|:..:|||...:|:||:::||.||:.......||
Human    70 MDERNQILTAYLWIRQIWHDAYLTWDRDQYDGLDSIRIPSDLVWRPDIVLYNKADDESSEPVNTN 134

  Fly   417 VVVRNNGSCLYVPPGIFKSTCKIDITWFPFDDQRCEMKFGSWTYDGFQLDLQLQDETGGDISSYV 481
            ||:|.:|...:..|.|.||:|.:|:|:||||:|:|.:.||||||:|.|:|: ......||:|.::
Human   135 VVLRYDGLITWDAPAITKSSCVVDVTYFPFDNQQCNLTFGSWTYNGNQVDI-FNALDSGDLSDFI 198

  Fly   482 LNGEWELLGVPGKRNEIYYNCCPEPYIDITFAIIIRRRTLYYFFNLIIPCVLIASMALLGFTLPP 546
            .:.|||:.|:|..:|.|.|.||.|||.|:||.::::||:.:|..||:||||||:.:|.|.|.||.
Human   199 EDVEWEVHGMPAVKNVISYGCCSEPYPDVTFTLLLKRRSSFYIVNLLIPCVLISFLAPLSFYLPA 263

  Fly   547 DSGEKLSLGVTILLSLTVFLNMVAETMPATSDAVPLLGTYFNCIMFMVASSVVSTILILNYHHRN 611
            .||||:||||||||::|||..||||.||| |:.|||:|.|:...|.::.:|...||:::|.|...
Human   264 ASGEKVSLGVTILLAMTVFQLMVAEIMPA-SENVPLIGKYYIATMALITASTALTIMVMNIHFCG 327

  Fly   612 ADTHEMSEWIRIVFLCWLPWILRMSRPGRPLILEFPTTPCSDTSSERKH-----QILSDVELKER 671
            |:...:..|.|:|.|.::..:|.:...|...:     :|  ..|.||.|     ..|.:..||..
Human   328 AEARPVPHWARVVILKYMSRVLFVYDVGESCL-----SP--HHSRERDHLTKVYSKLPESNLKAA 385

  Fly   672 SSKSLLANVLDIDDDFRHN--CRPMTPGGTLPHNPAFYRTVYGQGDDGSIGPIGSTRMPDAVTHH 734
            .:|. |:...|::...:::  |:     |..|.....|...|                       
Human   386 RNKD-LSRKKDMNKRLKNDLGCQ-----GKNPQEAESYCAQY----------------------- 421

  Fly   735 TCIKSSTEYELGLILKEIRFITDQLRKDDECNDIANDWKFAAMVVDRLCLIIFTMFTILATIAVL 799
                       .::.:.|.:|...|:.....|...::||..|.|:||..:.||.:...:.||.::
Human   422 -----------KVLTRNIEYIAKCLKDHKATNSKGSEWKKVAKVIDRFFMWIFFIMVFVMTILII 475

  Fly   800 LSA 802
            ..|
Human   476 ARA 478

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha5NP_001356885.1 LIC 313..802 CDD:273305 169/495 (34%)
CHRNA9NP_060051.2 LIC 10..474 CDD:273305 175/512 (34%)
Neur_chan_LBD 31..236 CDD:280998 82/205 (40%)
Neur_chan_memb 244..474 CDD:280999 83/277 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D363540at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.920

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