DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment nAChRalpha5 and ort

DIOPT Version :9

Sequence 1:NP_001356885.1 Gene:nAChRalpha5 / 34826 FlyBaseID:FBgn0028875 Length:837 Species:Drosophila melanogaster
Sequence 2:NP_524406.1 Gene:ort / 45910 FlyBaseID:FBgn0003011 Length:485 Species:Drosophila melanogaster


Alignment Length:447 Identity:99/447 - (22%)
Similarity:180/447 - (40%) Gaps:99/447 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   294 IFLLIYLNLSAKVCLAGY-----HEKRLLHDLLDP----YNTLERPVLNESDPLQLSFGLTLMQI 349
            :|.:|.| :...:|:..|     .:...:.|:|..    |:.: ||...|..|..:.|.:|:|.:
  Fly     2 VFQIIIL-VICTICMKHYAKGEFQQSLAITDILPEDIKRYDKM-RPPKKEGQPTIVYFHVTVMGL 64

  Fly   350 IDVDEKNQLLVTNVWLKLEWNDMNLRW---NTSDY-----GGVKDLRIPPHRIWKPDVLMYNSAD 406
            ..:||.:...|.:|:....|.|..||.   .|.:|     ..:|::       |:||....|:..
  Fly    65 DSIDENSMTYVADVFFAQTWKDHRLRLPENMTQEYRLLEVDWLKNM-------WRPDSFFKNAKS 122

  Fly   407 EGFDGTYQTNVV------VRNNGSCLYVPPGIFKSTCKIDITWFPFDDQRCEMKFGSWTYDGFQL 465
            .    |:||..:      :..:.:.||:.....|.:|.::...:|.|.|.|:::..|.::....|
  Fly   123 V----TFQTMTIPNHYMWLYKDKTILYMVKLTLKLSCIMNFAIYPHDTQECKLQMESLSHTTDDL 183

  Fly   466 DLQLQDETGGDISSYVLNGEWELLGVPGKRNE------IY----YNCCPEPYIDITFAIIIRRRT 520
            ..|....|     ..|::...||..|...|||      :|    :.|     :::.|.  ::||.
  Fly   184 IFQWDPTT-----PLVVDENIELPQVALIRNETADCTQVYSTGNFTC-----LEVVFT--LKRRL 236

  Fly   521 LYYFFNLIIPCVLIASMALLGFTLPPDSG-EKLSLGVTILLSLTVFLNMVAETMPATSDAVPLLG 584
            :||.||..||..:|..|:.:.|.:.|::. .:::||||.||:|:........::|..|       
  Fly   237 VYYVFNTYIPTCMIVIMSWVSFWIKPEAAPARVTLGVTSLLTLSTQHAKSQSSLPPVS------- 294

  Fly   585 TYFNCI-MFMVASSVVSTILILNYHHRNADTHEMSEWIRIVFLCWLPWILRMSRPGRPLILEFP- 647
             |...: .||...:|...:.::.|...|            :.|...|....|:.|.:|:..:.| 
  Fly   295 -YLKAVDAFMSVCTVFVFMALMEYCLIN------------IVLSDTPIPKPMAYPPKPVAGDGPK 346

  Fly   648 -----TTPCSDTSSERKHQI----LSDVELKERSSKSLLANVLDIDDDFRHNCRPMT 695
                 ..|....|:..|.|.    |:|.::::         :..|.|:...|.|.:|
  Fly   347 KEGEGAPPGGSNSTASKQQATMLPLADEKIEK---------IEKIFDEMTKNRRIVT 394

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha5NP_001356885.1 LIC 313..802 CDD:273305 94/423 (22%)
ortNP_524406.1 LIC 31..481 CDD:273305 94/417 (23%)
Neur_chan_LBD 38..235 CDD:280998 48/220 (22%)
Neur_chan_memb 243..>334 CDD:280999 23/110 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18945
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

Return to query results.
Submit another query.